PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G405400.4

Common Name

B456_009G405400, LOC105766700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 589aa MW: 64419.4 Da PI: 8.227

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G405400.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.8	4.2e-07	238	299	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 eke +r rr NRe+Ar +R++a +e+L+ kv L++eN+ Lk e ke+++ +s Gorai.009G405400.4 238 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 299 799*******************************************6655556777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.4E-4	235	292	No hit	No description
SMART	SM00338	2.0E-7	238	302	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.577	240	303	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.82E-5	242	294	No hit	No description
CDD	cd14702	5.00E-13	243	294	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MELGRGFLSS SCASPTADAA KDALAADRMD MEAAEILAAL AHSKKRLAVS VSAEFGAKWG 60 CKGSRLRKRA STSTESPPSG VGSNPVQSGS DLAEDQATIG QEQSQVMSTS VVIESVVAES 120 LNGSHPSAER YPSDGVVRSS QNVTKAEKET CRLHRMLTRK ESDWQMIHER PILFSTVGIP 180 EKDIWEDSPL NEMTGNNALI KPVKTEQNAE SVRSSPAGAI KHMSGGGGRS RQNLTEAEKE 240 ARRLRRILAN RESARQTIRR RQALCEKLTL KVTDLTQENE NLKRAKELAL KEYQSQDSTN 300 KHLKAEMAKA LKADEGKTTA ELLDHHISGP SGNYPYFFYN QHHFLPFCWP SSVQSSHPVQ 360 SQCGQNAIFV PSSISSPANG RLDSSFNQEN PINVNGPKTA LYVVPYPWVF SLPDQRSGLH 420 PQPSCGTKDI EDETSVSNHF NAGCHLKPVM NEKYNSSLPV EVEKEANDPI EASPNNKNCT 480 SVRLPADVGV QCMSHIKEEV LVPGPLCSAG TTFENRTDHV VKTEEAPIGA FHFVGALPEE 540 NKESKNYTSK KVLDAVAAAE ARKRRKELTK LKNLHGRHRS PLSLSAKI*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MELGRGFLSS SCASPTADAA KDALAADRMD MEAAEILAAL AHSKKRLAVS VSAEFGAKWG  60
CKGSRLRKRA STSTESPPSG VGSNPVQSGS DLAEDQATIG QEQSQVMSTS VVIESVVAES  120
LNGSHPSAER YPSDGVVRSS QNVTKAEKET CRLHRMLTRK ESDWQMIHER PILFSTVGIP  180
EKDIWEDSPL NEMTGNNALI KPVKTEQNAE SVRSSPAGAI KHMSGGGGRS RQNLTEAEKE  240
ARRLRRILAN RESARQTIRR RQALCEKLTL KVTDLTQENE NLKRAKELAL KEYQSQDSTN  300
KHLKAEMAKA LKADEGKTTA ELLDHHISGP SGNYPYFFYN QHHFLPFCWP SSVQSSHPVQ  360
SQCGQNAIFV PSSISSPANG RLDSSFNQEN PINVNGPKTA LYVVPYPWVF SLPDQRSGLH  420
PQPSCGTKDI EDETSVSNHF NAGCHLKPVM NEKYNSSLPV EVEKEANDPI EASPNNKNCT  480
SVRLPADVGV QCMSHIKEEV LVPGPLCSAG TTFENRTDHV VKTEEAPIGA FHFVGALPEE  540
NKESKNYTSK KVLDAVAAAE ARKRRKELTK LKNLHGRHRS PLSLSAKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	561	566	RKRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441720.1	0.0	PREDICTED: uncharacterized protein LOC105766700 isoform X2
TrEMBL	A0A0D2TZP6	0.0	A0A0D2TZP6_GOSRA; Uncharacterized protein
STRING	Gorai.009G405400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	1e-43	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G405400.4
Entrez Gene	105766700

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]