PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G405400.3

Common Name

B456_009G405400, LOC105766700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 590aa MW: 64547.5 Da PI: 8.227

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G405400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.8	4.2e-07	239	300	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 eke +r rr NRe+Ar +R++a +e+L+ kv L++eN+ Lk e ke+++ +s Gorai.009G405400.3 239 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 300 799*******************************************6655556777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.4E-4	236	293	No hit	No description
SMART	SM00338	2.0E-7	239	303	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.577	241	304	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.82E-5	243	295	No hit	No description
CDD	cd14702	5.32E-13	244	295	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MELGRGFLSS SCASPTADAA KDALAADRMD MEAAEILAAL AHSKKRLAVS VSAEFGAKWG 60 CKGSRLRKRA STSTESPPSG VGSNPVQSGS DLAEQDQATI GQEQSQVMST SVVIESVVAE 120 SLNGSHPSAE RYPSDGVVRS SQNVTKAEKE TCRLHRMLTR KESDWQMIHE RPILFSTVGI 180 PEKDIWEDSP LNEMTGNNAL IKPVKTEQNA ESVRSSPAGA IKHMSGGGGR SRQNLTEAEK 240 EARRLRRILA NRESARQTIR RRQALCEKLT LKVTDLTQEN ENLKRAKELA LKEYQSQDST 300 NKHLKAEMAK ALKADEGKTT AELLDHHISG PSGNYPYFFY NQHHFLPFCW PSSVQSSHPV 360 QSQCGQNAIF VPSSISSPAN GRLDSSFNQE NPINVNGPKT ALYVVPYPWV FSLPDQRSGL 420 HPQPSCGTKD IEDETSVSNH FNAGCHLKPV MNEKYNSSLP VEVEKEANDP IEASPNNKNC 480 TSVRLPADVG VQCMSHIKEE VLVPGPLCSA GTTFENRTDH VVKTEEAPIG AFHFVGALPE 540 ENKESKNYTS KKVLDAVAAA EARKRRKELT KLKNLHGRHR SPLSLSAKI*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MELGRGFLSS SCASPTADAA KDALAADRMD MEAAEILAAL AHSKKRLAVS VSAEFGAKWG  60
CKGSRLRKRA STSTESPPSG VGSNPVQSGS DLAEQDQATI GQEQSQVMST SVVIESVVAE  120
SLNGSHPSAE RYPSDGVVRS SQNVTKAEKE TCRLHRMLTR KESDWQMIHE RPILFSTVGI  180
PEKDIWEDSP LNEMTGNNAL IKPVKTEQNA ESVRSSPAGA IKHMSGGGGR SRQNLTEAEK  240
EARRLRRILA NRESARQTIR RRQALCEKLT LKVTDLTQEN ENLKRAKELA LKEYQSQDST  300
NKHLKAEMAK ALKADEGKTT AELLDHHISG PSGNYPYFFY NQHHFLPFCW PSSVQSSHPV  360
QSQCGQNAIF VPSSISSPAN GRLDSSFNQE NPINVNGPKT ALYVVPYPWV FSLPDQRSGL  420
HPQPSCGTKD IEDETSVSNH FNAGCHLKPV MNEKYNSSLP VEVEKEANDP IEASPNNKNC  480
TSVRLPADVG VQCMSHIKEE VLVPGPLCSA GTTFENRTDH VVKTEEAPIG AFHFVGALPE  540
ENKESKNYTS KKVLDAVAAA EARKRRKELT KLKNLHGRHR SPLSLSAKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	562	567	RKRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441719.1	0.0	PREDICTED: uncharacterized protein LOC105766700 isoform X1
TrEMBL	A0A0D2V0F6	0.0	A0A0D2V0F6_GOSRA; Uncharacterized protein
STRING	Gorai.009G405400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	2e-43	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G405400.3
Entrez Gene	105766700

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]