PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G405400.2

Common Name

B456_009G405400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 604aa MW: 66255.6 Da PI: 8.7117

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G405400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.7	4.3e-07	253	314	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 eke +r rr NRe+Ar +R++a +e+L+ kv L++eN+ Lk e ke+++ +s Gorai.009G405400.2 253 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 314 799*******************************************6655556777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-4	250	307	No hit	No description
SMART	SM00338	2.0E-7	253	317	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.577	255	318	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.98E-5	257	309	No hit	No description
CDD	cd14702	6.30E-13	258	309	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
LRYILKAPQR LVRDLFLLGR GFLSSSCASP TADAAKDALA ADRMDMEAAE ILAALAHSKK 60 RLAVSVSAEF GAKWGCKGSR LRKRASTSTE SPPSGVGSNP VQSGSDLAED QATIGQEQSQ 120 VMSTSVVIES VVAESLNGSH PSAERYPSDG VVRSSQNVTK AEKETCRLHR MLTRKESDWQ 180 MIHERPILFS TVGIPEKDIW EDSPLNEMTG NNALIKPVKT EQNAESVRSS PAGAIKHMSG 240 GGGRSRQNLT EAEKEARRLR RILANRESAR QTIRRRQALC EKLTLKVTDL TQENENLKRA 300 KELALKEYQS QDSTNKHLKA EMAKALKADE GKTTAELLDH HISGPSGNYP YFFYNQHHFL 360 PFCWPSSVQS SHPVQSQCGQ NAIFVPSSIS SPANGRLDSS FNQENPINVN GPKTALYVVP 420 YPWVFSLPDQ RSGLHPQPSC GTKDIEDETS VSNHFNAGCH LKPVMNEKYN SSLPVEVEKE 480 ANDPIEASPN NKNCTSVRLP ADVGVQCMSH IKEEVLVPGP LCSAGTTFEN RTDHVVKTEE 540 APIGAFHFVG ALPEENKESK NYTSKKVLDA VAAAEARKRR KELTKLKNLH GRHRSPLSLS 600 AKI*

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

LRYILKAPQR LVRDLFLLGR GFLSSSCASP TADAAKDALA ADRMDMEAAE ILAALAHSKK  60
RLAVSVSAEF GAKWGCKGSR LRKRASTSTE SPPSGVGSNP VQSGSDLAED QATIGQEQSQ  120
VMSTSVVIES VVAESLNGSH PSAERYPSDG VVRSSQNVTK AEKETCRLHR MLTRKESDWQ  180
MIHERPILFS TVGIPEKDIW EDSPLNEMTG NNALIKPVKT EQNAESVRSS PAGAIKHMSG  240
GGGRSRQNLT EAEKEARRLR RILANRESAR QTIRRRQALC EKLTLKVTDL TQENENLKRA  300
KELALKEYQS QDSTNKHLKA EMAKALKADE GKTTAELLDH HISGPSGNYP YFFYNQHHFL  360
PFCWPSSVQS SHPVQSQCGQ NAIFVPSSIS SPANGRLDSS FNQENPINVN GPKTALYVVP  420
YPWVFSLPDQ RSGLHPQPSC GTKDIEDETS VSNHFNAGCH LKPVMNEKYN SSLPVEVEKE  480
ANDPIEASPN NKNCTSVRLP ADVGVQCMSH IKEEVLVPGP LCSAGTTFEN RTDHVVKTEE  540
APIGAFHFVG ALPEENKESK NYTSKKVLDA VAAAEARKRR KELTKLKNLH GRHRSPLSLS  600
AKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	576	581	RKRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441720.1	0.0	PREDICTED: uncharacterized protein LOC105766700 isoform X2
TrEMBL	A0A0D2U2L9	0.0	A0A0D2U2L9_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G405400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	2e-43	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G405400.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]