PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G405400.1

Common Name

B456_009G405400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 605aa MW: 66383.8 Da PI: 8.7117

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G405400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.7	4.3e-07	254	315	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 eke +r rr NRe+Ar +R++a +e+L+ kv L++eN+ Lk e ke+++ +s Gorai.009G405400.1 254 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 315 799*******************************************6655556777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-4	251	308	No hit	No description
SMART	SM00338	2.0E-7	254	318	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.577	256	319	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.98E-5	258	310	No hit	No description
CDD	cd14702	6.96E-13	259	310	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
LRYILKAPQR LVRDLFLLGR GFLSSSCASP TADAAKDALA ADRMDMEAAE ILAALAHSKK 60 RLAVSVSAEF GAKWGCKGSR LRKRASTSTE SPPSGVGSNP VQSGSDLAEQ DQATIGQEQS 120 QVMSTSVVIE SVVAESLNGS HPSAERYPSD GVVRSSQNVT KAEKETCRLH RMLTRKESDW 180 QMIHERPILF STVGIPEKDI WEDSPLNEMT GNNALIKPVK TEQNAESVRS SPAGAIKHMS 240 GGGGRSRQNL TEAEKEARRL RRILANRESA RQTIRRRQAL CEKLTLKVTD LTQENENLKR 300 AKELALKEYQ SQDSTNKHLK AEMAKALKAD EGKTTAELLD HHISGPSGNY PYFFYNQHHF 360 LPFCWPSSVQ SSHPVQSQCG QNAIFVPSSI SSPANGRLDS SFNQENPINV NGPKTALYVV 420 PYPWVFSLPD QRSGLHPQPS CGTKDIEDET SVSNHFNAGC HLKPVMNEKY NSSLPVEVEK 480 EANDPIEASP NNKNCTSVRL PADVGVQCMS HIKEEVLVPG PLCSAGTTFE NRTDHVVKTE 540 EAPIGAFHFV GALPEENKES KNYTSKKVLD AVAAAEARKR RKELTKLKNL HGRHRSPLSL 600 SAKI*

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

LRYILKAPQR LVRDLFLLGR GFLSSSCASP TADAAKDALA ADRMDMEAAE ILAALAHSKK  60
RLAVSVSAEF GAKWGCKGSR LRKRASTSTE SPPSGVGSNP VQSGSDLAEQ DQATIGQEQS  120
QVMSTSVVIE SVVAESLNGS HPSAERYPSD GVVRSSQNVT KAEKETCRLH RMLTRKESDW  180
QMIHERPILF STVGIPEKDI WEDSPLNEMT GNNALIKPVK TEQNAESVRS SPAGAIKHMS  240
GGGGRSRQNL TEAEKEARRL RRILANRESA RQTIRRRQAL CEKLTLKVTD LTQENENLKR  300
AKELALKEYQ SQDSTNKHLK AEMAKALKAD EGKTTAELLD HHISGPSGNY PYFFYNQHHF  360
LPFCWPSSVQ SSHPVQSQCG QNAIFVPSSI SSPANGRLDS SFNQENPINV NGPKTALYVV  420
PYPWVFSLPD QRSGLHPQPS CGTKDIEDET SVSNHFNAGC HLKPVMNEKY NSSLPVEVEK  480
EANDPIEASP NNKNCTSVRL PADVGVQCMS HIKEEVLVPG PLCSAGTTFE NRTDHVVKTE  540
EAPIGAFHFV GALPEENKES KNYTSKKVLD AVAAAEARKR RKELTKLKNL HGRHRSPLSL  600
SAKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	577	582	RKRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441719.1	0.0	PREDICTED: uncharacterized protein LOC105766700 isoform X1
TrEMBL	A0A0D2QW37	0.0	A0A0D2QW37_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G405400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11211	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	2e-43	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G405400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]