PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G355700.3
Common NameB456_009G355700, LOC105766250
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 143aa    MW: 15791.9 Da    PI: 10.8085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G355700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-2077125255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrd    g+r r +lg+f+taeeAa a+++a+ kl+g
  Gorai.009G355700.3  77 RYRGVRQRP-WGRWAAEIRD----GRRMRLWLGTFDTAEEAAVAYDQAAVKLRG 125
                         8********.**********....336*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.5E-383141IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000187.96E-2976132No hitNo description
Gene3DG3DSA:3.30.730.103.0E-3077133IPR001471AP2/ERF domain
PfamPF008473.1E-1477125IPR001471AP2/ERF domain
SMARTSM003801.7E-3477139IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2177133IPR016177DNA-binding domain
PROSITE profilePS5103223.45977133IPR001471AP2/ERF domain
PRINTSPR003671.3E-117889IPR001471AP2/ERF domain
PRINTSPR003671.3E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSPPQPNGKP QQPISRRIVR ITVTDADATD SSSDEEAAPP KKIQKRPKKK LVNEITIGVS  60
TKENDVIAGS SHSKVKRYRG VRQRPWGRWA AEIRDGRRMR LWLGTFDTAE EAAVAYDQAA  120
VKLRGPNAPT NFKLLDCNAV QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2169132971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945PKKIQKR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441081.11e-101PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ9C9952e-35ERF70_ARATH; Ethylene-responsive transcription factor ERF070
SwissprotQ9SUE38e-34CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0D2U0D61e-99A0A0D2U0D6_GOSRA; Uncharacterized protein
STRINGGorai.009G355700.11e-100(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.19e-19ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  5. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]