PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G331300.1
Common NameB456_009G331300, LOC105767559
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 212aa    MW: 23812.7 Da    PI: 9.3112
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G331300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-1957111256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq + Lee F++n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Gorai.009G331300.1  57 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASQLKLRPRQVEVWFQNRRARSK 111
                         788899***********************************************98 PP
2HD-ZIP_I/II114.85.1e-3757145190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rlskeq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRAR k+kq+E+++++Lkr+++ l+++n++L++eveeLr +
  Gorai.009G331300.1  57 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASQLKLRPRQVEVWFQNRRARSKLKQTEMEFQYLKRWFEFLTKQNQELQSEVEELR-A 145
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-1846114IPR009057Homeodomain-like
PROSITE profilePS5007117.03853113IPR001356Homeobox domain
SMARTSM003891.6E-1655117IPR001356Homeobox domain
CDDcd000866.11E-1656114No hitNo description
Gene3DG3DSA:1.10.10.608.7E-1857111IPR009057Homeodomain-like
PfamPF000462.1E-1657111IPR001356Homeobox domain
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
SMARTSM003406.2E-15113156IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-8113146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAFSSSNLDL TISVPSSARD LDMNRLPSPG SDDEWIASTM EVVVDEENTT NDGVVPRKKL  60
RLSKEQSRLL EESFRQNHTL NPRQKEALAS QLKLRPRQVE VWFQNRRARS KLKQTEMEFQ  120
YLKRWFEFLT KQNQELQSEV EELRALQVGP PTVISPHSRE PLPASTLTTC PRCERVTTIS  180
SRGAGLINTT TSTNNTSTTS AHQSRPSSAA G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442579.11e-154PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2
RefseqXP_016684550.11e-154PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX12e-70HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-70HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A0D2TZ181e-152A0A0D2TZ18_GOSRA; Uncharacterized protein
TrEMBLA0A1U8J2I61e-152A0A1U8J2I6_GOSHI; homeobox-leucine zipper protein HOX3-like
TrEMBLA0A2P5RRZ81e-152A0A2P5RRZ8_GOSBA; Uncharacterized protein
STRINGGorai.009G331300.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-68homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]