PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G329400.3

Common Name

B456_009G329400, LOC105765801

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 301aa MW: 33803.5 Da PI: 8.8645

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G329400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	20	73	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++av++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Gorai.009G329400.3 20 PRLRWTPQLHHCFLHAVDRLGGQHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	16	76	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-31	16	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-15	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	20	73	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-8	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGRCGRHNGA VRQYIRSKVP RLRWTPQLHH CFLHAVDRLG GQHKATPKLV LQLMDVKGLT 60 ISHVKSHLQM YRSMRSDYGR QVKSSTYERR QSFDDNHDFD GRVVPIEESC SHLIYNNPFP 120 SKRHGICETR VSNTCSFDDY KQTMDARKRI KQDNGGYVWD QTINDSHSLG QPLALSLPHD 180 LYSLNAFRSY SLATKVEVED QKRAHAQDAK LVERNIRRQE EEDGGGGGCE LSLSLSLQYH 240 NTSSTSETSS SEAFSSYLRS NYKDCWGSSS TSTSSSSSSS SSVTRRSAIN LDLSIALCGN 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-18	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1972	0.0	flower\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440504.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A0D2TYV9	0.0	A0A0D2TYV9_GOSRA; Uncharacterized protein
STRING	Gorai.009G329400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G329400.3
Entrez Gene	105765801

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]