PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G313700.2
Common NameB456_009G313700, LOC105770956
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 338aa    MW: 36803.5 Da    PI: 6.6164
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G313700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17243276134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Gorai.009G313700.2 243 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 276
                         99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-749331IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.385237273IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16237287IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15241300No hitNo description
Gene3DG3DSA:3.30.50.109.6E-15241274IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.45E-14242299No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15243276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MIGSTDFIDE IDCGSFFDDL IDFPNEDVEA YESTAVINAA AFPSIWTTQP ESLPLSDSVF  60
LNNSASELST ELFVPYEDIV QLEWMSKFVE DTQCGASLTT KKEDSSSISE GSNHQFQTCS  120
PVSVLESSSS CSGMKPLPRS PETSAPGKRG RPRSKRPRLA TFNHHPGVQM TSPASSVNEN  180
DIPQPFAVPK VLSDSENYAE SRLLIKLPKQ VNPEHKKKKL SVSAAAGIAD YSQNPTGQAV  240
RKCMHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV PSVHSNSHKK  300
VLEMRTKSCA LAPTTTMAAN NLPELIPNKS NPALDYI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.420.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487910140.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6208927e-75JX620892.1 Gossypium hirsutum clone NBRI_GE67259 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447793.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_012447794.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A0D2SBL80.0A0A0D2SBL8_GOSRA; GATA transcription factor
STRINGGorai.009G313700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.26e-47GATA family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]