PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G309300.3
Common NameB456_009G309300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 384aa    MW: 43046.3 Da    PI: 5.6366
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G309300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-31169350128
                 NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+k++++ewyfFs  dkky +g r nrat +gyWkatgkd+ev + +++l+g+kktLvf++g+ap+g +t+Wvmheyrl
  Gorai.009G309300.3  16 KLKTRDQEWYFFSLLDKKYGNGGRMNRATGQGYWKATGKDREVRH-NSQLIGMKKTLVFHSGKAPDGLRTNWVMHEYRL 93 
                         4567899**************************************.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.1071115IPR003441NAC domain
SuperFamilySSF1019415.49E-3717115IPR003441NAC domain
PfamPF023659.1E-151993IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVLKFLVGGC FSDKSKLKTR DQEWYFFSLL DKKYGNGGRM NRATGQGYWK ATGKDREVRH  60
NSQLIGMKKT LVFHSGKAPD GLRTNWVMHE YRLIEEELER IGALQGYVLC RVIHKNNIGP  120
PNGNRYAPFI EAEWDDGSAA LVPGLDTEDD IAAGNESIAR NDVAATENAA TESNGVLRIS  180
SEQDIEHPDE DAPPSDDVPR ESSNERTDDC TLLPPFKIER SDDCPPLCMP NREAPLSLFG  240
HKRRRHNDFG PNHANVTENS TRMTQDRWSS TTTTTTTTTP PPSSATTMAV SALLEFSLME  300
SMEPKENHHV PPTPKYNATT NLNSMVPPSC MKLINYLQNE IHKTSIERET LKLEMMSAQT  360
MIDILQSKID FLSKENEDLK KSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-292111770167NO APICAL MERISTEM PROTEIN
1ut4_B4e-292111770167NO APICAL MERISTEM PROTEIN
1ut7_A4e-292111770167NO APICAL MERISTEM PROTEIN
1ut7_B4e-292111770167NO APICAL MERISTEM PROTEIN
3swm_A3e-292111773170NAC domain-containing protein 19
3swm_B3e-292111773170NAC domain-containing protein 19
3swm_C3e-292111773170NAC domain-containing protein 19
3swm_D3e-292111773170NAC domain-containing protein 19
3swp_A3e-292111773170NAC domain-containing protein 19
3swp_B3e-292111773170NAC domain-containing protein 19
3swp_C3e-292111773170NAC domain-containing protein 19
3swp_D3e-292111773170NAC domain-containing protein 19
4dul_A4e-292111770167NAC domain-containing protein 19
4dul_B4e-292111770167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447653.10.0PREDICTED: NAC domain-containing protein 45-like isoform X2
SwissprotQ9SQX91e-106NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A0D2QRA90.0A0A0D2QRA9_GOSRA; Uncharacterized protein
STRINGGorai.009G309300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-102NAC domain containing protein 50
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]