PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G309300.1

Common Name

B456_009G309300, LOC105770842

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 452aa MW: 50409.4 Da PI: 5.9334

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G309300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.3e-53	33	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l+pGfrFhPtdeelv++yLk+kv++k+ ++ ++i+evdiyk+ePw+L +k+k++++ewyfFs dkky +g r nrat +gyWkatgkd Gorai.009G309300.1 33 LAPGFRFHPTDEELVSYYLKRKVTNKPARF-DAIAEVDIYKHEPWNLSdkSKLKTRDQEWYFFSLLDKKYGNGGRMNRATGQGYWKATGKD 122 579**********************999.99**********85348889999***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ev + +++l+g+kktLvf++g+ap+g +t+Wvmheyrl Gorai.009G309300.1 123 REVRH-NSQLIGMKKTLVFHSGKAPDGLRTNWVMHEYRL 160 *.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-60	29	182	IPR003441	NAC domain
PROSITE profile	PS51005	56.992	33	182	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	35	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MGRETSLVAD PGPTAVATAT AKAAKTGSSA TALAPGFRFH PTDEELVSYY LKRKVTNKPA 60 RFDAIAEVDI YKHEPWNLSD KSKLKTRDQE WYFFSLLDKK YGNGGRMNRA TGQGYWKATG 120 KDREVRHNSQ LIGMKKTLVF HSGKAPDGLR TNWVMHEYRL IEEELERIGA LQGYVLCRVI 180 HKNNIGPPNG NRYAPFIEAE WDDGSAALVP GLDTEDDIAA GNESIARNDV AATENAATES 240 NGVLRISSEQ QDIEHPDEDA PPSDDVPRES SNERTDDCTL LPPFKIERSD DCPPLCMPNR 300 EAPLSLFGHK RRRHNDFGPN HANVTENSTR MTQDRWSSTT TTTTTTTPPP SSATTMAVSA 360 LLEFSLMESM EPKENHHVPP TPKYNATTNL NSMVPPSCMK LINYLQNEIH KTSIERETLK 420 LEMMSAQTMI DILQSKIDFL SKENEDLKKS N*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MGRETSLVAD PGPTAVATAT AKAAKTGSSA TALAPGFRFH PTDEELVSYY LKRKVTNKPA  60
RFDAIAEVDI YKHEPWNLSD KSKLKTRDQE WYFFSLLDKK YGNGGRMNRA TGQGYWKATG  120
KDREVRHNSQ LIGMKKTLVF HSGKAPDGLR TNWVMHEYRL IEEELERIGA LQGYVLCRVI  180
HKNNIGPPNG NRYAPFIEAE WDDGSAALVP GLDTEDDIAA GNESIARNDV AATENAATES  240
NGVLRISSEQ QDIEHPDEDA PPSDDVPRES SNERTDDCTL LPPFKIERSD DCPPLCMPNR  300
EAPLSLFGHK RRRHNDFGPN HANVTENSTR MTQDRWSSTT TTTTTTTPPP SSATTMAVSA  360
LLEFSLMESM EPKENHHVPP TPKYNATTNL NSMVPPSCMK LINYLQNEIH KTSIERETLK  420
LEMMSAQTMI DILQSKIDFL SKENEDLKKS N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-47	32	184	19	170	NAC domain-containing protein 19
3swm_B	5e-47	32	184	19	170	NAC domain-containing protein 19
3swm_C	5e-47	32	184	19	170	NAC domain-containing protein 19
3swm_D	5e-47	32	184	19	170	NAC domain-containing protein 19
3swp_A	5e-47	32	184	19	170	NAC domain-containing protein 19
3swp_B	5e-47	32	184	19	170	NAC domain-containing protein 19
3swp_C	5e-47	32	184	19	170	NAC domain-containing protein 19
3swp_D	5e-47	32	184	19	170	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269\|PubMed:25578968}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269\|PubMed:19237690, ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990, ECO:0000269\|PubMed:28207953}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269\|PubMed:16553893}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847246	1e-168	KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447652.1	0.0	PREDICTED: NAC domain-containing protein 86-like isoform X1
Swissprot	Q9SQY0	1e-145	NAC52_ARATH; NAC domain containing protein 52
TrEMBL	A0A0D2TY32	0.0	A0A0D2TY32_GOSRA; Uncharacterized protein
STRING	Gorai.009G309300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1780	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-134	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	Gorai.009G309300.1
Entrez Gene	105770842

Publications ? help Back to Top
Higgins JD,Ferdous M,Osman K,Franklin FC The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] Elmayan T, et al. Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]