PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G292600.1

Common Name

B456_009G292600, LOC105770589

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 306aa MW: 34672.7 Da PI: 6.5985

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G292600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.8	6.1e-25	128	190	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 ++Dg++WrKYGqK++ +s++prsY+rCt + gC+++k+v+r ++ +++++tY g+H+++ Gorai.009G292600.1 128 VEDGHAWRKYGQKQILNSKHPRSYFRCTRKydqGCKATKQVQRLEDAgSQMFQTTYIGTHTCR 190 58************************998899*****9864268*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-24	119	190	IPR003657	WRKY domain
PROSITE profile	PS50811	17.132	123	187	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-23	125	190	IPR003657	WRKY domain
SMART	SM00774	5.1E-37	128	191	IPR003657	WRKY domain
Pfam	PF03106	3.8E-25	129	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGSVSSWPEG VPTSNKERVI KELVNGQECA KQLQILLHNW CEKNGRLSAE ELVHKIFASF 60 DHALSLLTSV ESAEDSQNQA TSYHDSPCCN GRSEDSTNSR KKLPSKEKRG CYKRRRDEHA 120 RTVVSSTVED GHAWRKYGQK QILNSKHPRS YFRCTRKYDQ GCKATKQVQR LEDAGSQMFQ 180 TTYIGTHTCR PDSFKAPQII IDSEPRESYN KFSYGSSNPK IPTKKLHEIT PPVKQETKEE 240 TPTTSGLTDM DSVVMWKDII GAEYGDVVSN VYTSTEITSQ NLELDLVMKP VEFEDDFQFD 300 ESELV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-23	122	190	2	69	OsWRKY45
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	115	RKKLPSKEKRGCYKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669776	0.0	KF669776.1 Gossypium hirsutum WRKY transcription factor 7 (WRKY7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447314.1	0.0	PREDICTED: probable WRKY transcription factor 70
TrEMBL	A0A0D2QQ73	0.0	A0A0D2QQ73_GOSRA; Uncharacterized protein
STRING	Gorai.009G292600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4061	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-45	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Gorai.009G292600.1
Entrez Gene	105770589

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]