PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G275700.1

Common Name

B456_009G275700, LOC105770565

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 406aa MW: 44159.4 Da PI: 10.1175

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G275700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.8	1.7e-16	327	374	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ +++ Gorai.009G275700.1 327 RRQRRMIKNRESAARSRARKQAYTTELEAEVAKLKEENQELQKKHDHI 374 79****************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.8E-15	323	388	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.381	325	374	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.76E-24	327	371	No hit	No description
SuperFamily	SSF57959	5.06E-12	327	376	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-15	327	373	No hit	No description
Pfam	PF00170	5.5E-14	327	376	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	330	345	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MNFKNFGSNQ PPSDDGGGGN KPPGNYPISR QPSVYSLTFD EFQSTMGGIG TDFGSMNMDE 60 LLKSIWSAEE TQTMASPGVG LVGNGGLQRQ GSLTLPRTLS HKTVDEVWRE ISNEFSLGTE 120 ATDNMPQRQQ TLKEITLEEF LVRAGVVRED NTQFSWKDNN VNGGFFGELP QAGSNTSGIG 180 IGFQQGGRGP NLMGNRLPDG GNQNGFQASN LHMNLNGVRP NQHHLTRPQQ QPLCPKQPGV 240 EFGAQTGLQS VGQLGSPGIR CSQGLYNGLI HGGGMSMVGL RSPTNHLSSD GIGKSSGDSS 300 SVSPVPYVFN GSLRGRKSSA VEKVAERRQR RMIKNRESAA RSRARKQAYT TELEAEVAKL 360 KEENQELQKK HDHIIKIQKN QVMEILNVQP GAKKRCLRRT RTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MNFKNFGSNQ PPSDDGGGGN KPPGNYPISR QPSVYSLTFD EFQSTMGGIG TDFGSMNMDE  60
LLKSIWSAEE TQTMASPGVG LVGNGGLQRQ GSLTLPRTLS HKTVDEVWRE ISNEFSLGTE  120
ATDNMPQRQQ TLKEITLEEF LVRAGVVRED NTQFSWKDNN VNGGFFGELP QAGSNTSGIG  180
IGFQQGGRGP NLMGNRLPDG GNQNGFQASN LHMNLNGVRP NQHHLTRPQQ QPLCPKQPGV  240
EFGAQTGLQS VGQLGSPGIR CSQGLYNGLI HGGGMSMVGL RSPTNHLSSD GIGKSSGDSS  300
SVSPVPYVFN GSLRGRKSSA VEKVAERRQR RMIKNRESAA RSRARKQAYT TELEAEVAKL  360
KEENQELQKK HDHIIKIQKN QVMEILNVQP GAKKRCLRRT RTGPW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447277.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-117	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A0D2UUY7	0.0	A0A0D2UUY7_GOSRA; Uncharacterized protein
STRING	Gorai.009G275700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-87	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Gorai.009G275700.1
Entrez Gene	105770565

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]