PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G260000.3
Common NameB456_009G260000, LOC105769884
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 618aa    MW: 69645.4 Da    PI: 4.6508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G260000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.3e-51211472128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtdeelv +yLk+k+ ++kl+l ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++  r+nrat +gyWkatgkd+
  Gorai.009G260000.3  21 PPGFRFHPTDEELVLYYLKRKICRRKLKL-DIIRETDVYKWDPEELPaQsILKSGDRQWFFFSPRDRKYPNAARSNRATGHGYWKATGKDR 110
                         8****************************.99**************96346778999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v++ ++++vg+kktLvfy+grap ge+tdWvmhey+l
  Gorai.009G260000.3 111 TVTC-NSRTVGVKKTLVFYRGRAPIGERTDWVMHEYTL 147
                         ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-5915170IPR003441NAC domain
PROSITE profilePS5100554.59720170IPR003441NAC domain
PfamPF023651.6E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MTVAAKAATT GSCFGEDQVW PPGFRFHPTD EELVLYYLKR KICRRKLKLD IIRETDVYKW  60
DPEELPAQSI LKSGDRQWFF FSPRDRKYPN AARSNRATGH GYWKATGKDR TVTCNSRTVG  120
VKKTLVFYRG RAPIGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEEW ADEEYASKAV DVITPVKHPN EAFPDDVEKA KNQIQSPLND IEEFMRQFAA  240
EPALPQPQAH FDNILPRLAG EEEIQSTLLD TSPRDVLLPK PVEVVHDHAS FELSQSPTSR  300
LQLQEAPEDA SVSDQFEQIP QICEEDFLEI DDLTSNVEKP AENGLQFNDW DGLGEFDLYH  360
DAAMFLQDIG PIEQGIVPFS YTENMINQLQ LQSNAFGNNQ QVQSQLNTIG DNQPQLNAFE  420
DGILNQVGYQ FHSSANNMMD QQLVPNSTVD QVDYHLPFQS FGNEMERQLQ MDQINGSIWI  480
NDQSGDVFTP SGSNLGNASS SSGLVYNGNN QDEGDKNGEG ASRFSTAVWS FVDSIPTTPA  540
SASESPSVNR AFERMSSFSR LRMNVRNTNA LTVNGGTTAR RRSRNKGFFF FSILGALCAI  600
LWFLIGMVRV VRSSISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-492114716140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446287.10.0PREDICTED: NAC domain-containing protein 17-like isoform X3
TrEMBLA0A0D2TS020.0A0A0D2TS02_GOSRA; Uncharacterized protein
STRINGGorai.009G260000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-115NAC domain containing protein 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]