PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G244200.1
Common NameB456_009G244200, LOC105770438
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 494aa    MW: 54672.6 Da    PI: 5.4125
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G244200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.8e-1121084861374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfse 86 
                         +v+lL+++Aea+   +++la+ +L rl+el+sp++ ++m+RlaayfteAL++ l +s+ + +k l +  ++++++   +++ laa++l+++
  Gorai.009G244200.1 108 MVHLLMAAAEALMGANKSLARVILVRLKELVSPSDgTNMERLAAYFTEALQSLLEGSGGGHSKHLiTNGPQHHRDkhrEADMLAAFQLLQD 198
                         689***************************888766********************998888877433333333346799*********** PP

                GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelg 173
                         +sP++kf+h+taNqaIleav +++r+Hi+D+di++G+QW++L+qaL sR+egpp  +lRiT++++ ++g  s  +++etg+rL+ fA+++g
  Gorai.009G244200.1 199 MSPYVKFGHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGSNGwrSIGTIQETGRRLTTFASSIG 289
                         **************************************************887666*********99999999****************** PP

                GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealey 263
                          pf+f+    ++ e++++++L++ +gEal++n++l+l ++ +++ s+     ++L+  k+l+P++v++ve+ea   +++ F+ rf+++l++
  Gorai.009G244200.1 290 QPFSFHQCRLDSDETFRPSALKLVRGEALIINCMLNLPHFSHRPPSSVA---SFLSGAKTLNPRLVTLVEEEAGPiGDGGFMGRFIDSLHH 377
                         *******9999*****************************988888877...9*******************9988*************** PP

                GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                         ysa+fdslea++p + ++r+ vEr++lg++i   +++  ++r+e  e+ ++W+e+l+++GF+pv++s  + +qaklll  ++ dgyrvee 
  Gorai.009G244200.1 378 YSAVFDSLEAGFPMQCRARALVERVILGPQIAGSLTQIYRNRNE--EESGRWSEWLDTMGFNPVSISFANHCQAKLLLGLFN-DGYRVEEL 465
                         ***************************************99766..556*********************************.******98 PP

                GRAS 355 .sgslvlgWkdrpLvsvSaWr 374
                          ++ +vl Wk+r+L+s+S W+
  Gorai.009G244200.1 466 aNNRVVLDWKSRRLLSASIWT 486
                         477788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.51382466IPR005202Transcription factor GRAS
PfamPF035146.3E-110108486IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAMAIDNAFE VDFCSYSTST TTITTADEDP ACTWNHWGSP VVDWGSLSSE RDEFQDLIES  60
MMDDGTGFEL TRLGHDHETS NSVSVSVSTD TMVADEETNG EDFKGLRMVH LLMAAAEALM  120
GANKSLARVI LVRLKELVSP SDGTNMERLA AYFTEALQSL LEGSGGGHSK HLITNGPQHH  180
RDKHREADML AAFQLLQDMS PYVKFGHFTA NQAILEAVTH DRRIHIVDYD IMEGIQWASL  240
MQALVSRKEG PPTPHLRITA LSRGSNGWRS IGTIQETGRR LTTFASSIGQ PFSFHQCRLD  300
SDETFRPSAL KLVRGEALII NCMLNLPHFS HRPPSSVASF LSGAKTLNPR LVTLVEEEAG  360
PIGDGGFMGR FIDSLHHYSA VFDSLEAGFP MQCRARALVE RVILGPQIAG SLTQIYRNRN  420
EEESGRWSEW LDTMGFNPVS ISFANHCQAK LLLGLFNDGY RVEELANNRV VLDWKSRRLL  480
SASIWTSPPD SDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5810148611378Protein SCARECROW
5b3h_D4e-5810148611378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447096.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A0D2S7G80.0A0A0D2S7G8_GOSRA; Uncharacterized protein
STRINGGorai.009G244200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-164GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]