PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G233900.2 | ||||||||
Common Name | B456_009G233900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 241aa MW: 27661.5 Da PI: 4.3726 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 20 | 73 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Gorai.009G233900.2 20 KKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 73 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129 | 1.9e-41 | 19 | 111 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++y alk + ++Le+e+++L++el Gorai.009G233900.2 19 EKKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGVLKANYSALKLDYDNLEQEKQALTAEL 109 69***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 +e Gorai.009G233900.2 110 RE 111 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.767 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 18 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-18 | 18 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.4E-16 | 20 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.21E-15 | 20 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 22 | 82 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.0E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.0E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.5E-17 | 75 | 116 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MLDGLEEEDS LEEADQTTEK KRRLSMNQVK ALEKNFELEN KLEPERKVKL AEELGLQPRQ 60 VAIWFQNRRA RWKTKQLEKD YGVLKANYSA LKLDYDNLEQ EKQALTAELR ELKAKLEENS 120 ESSHSVKEDS PKSSQQVKDQ GFFDNDDDSN EIVKEESNGN AQLLISPSSS SSFQFNGYSS 180 SSDSSNHLWF QPFDSSLILG NMYQPQLVKV EEQCVFTTEE SCNFFSVDQA PTLQWYFTGQ 240 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 75 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628210.1 | 1e-175 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A0B0MIF3 | 1e-173 | A0A0B0MIF3_GOSAR; Homeobox-leucine zipper ATHB-6-like protein | ||||
TrEMBL | A0A0D2TPV1 | 1e-174 | A0A0D2TPV1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G233900.1 | 1e-174 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-29 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G233900.2 |
Publications ? help Back to Top | |||
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