PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G233900.1

Common Name

B456_009G233900, LOC105770322

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 278aa MW: 31933.4 Da PI: 4.5695

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G233900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Gorai.009G233900.1 57 KKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 110 566899***********************************************9 PP
2	HD-ZIP_I/II	127.1	7.6e-41	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++y alk + ++Le+e+++L++el Gorai.009G233900.1 56 EKKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGVLKANYSALKLDYDNLEQEKQALTAEL 146 69***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 +e Gorai.009G233900.1 147 RE 148 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.767	52	112	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	55	116	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-18	55	123	IPR009057	Homeodomain-like
CDD	cd00086	6.67E-15	57	113	No hit	No description
Pfam	PF00046	8.2E-16	57	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-19	59	119	IPR009057	Homeodomain-like
PRINTS	PR00031	7.6E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.6E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.1E-17	112	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MKQLTCSGSL DALNPFFPPK EEKNSKKKQI YSREFQAMLD GLEEEDSLEE ADQTTEKKRR 60 LSMNQVKALE KNFELENKLE PERKVKLAEE LGLQPRQVAI WFQNRRARWK TKQLEKDYGV 120 LKANYSALKL DYDNLEQEKQ ALTAELRELK AKLEENSESS HSVKEDSPKS SQQVKDQGFF 180 DNDDDSNEIV KEESNGNAQL LISPSSSSSF QFNGYSSSSD SSNHLWFQPF DSSLILGNMY 240 QPQLVKVEEQ CVFTTEESCN FFSVDQAPTL QWYFTGQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	112	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446922.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A0D2S6W3	0.0	A0A0D2S6W3_GOSRA; Uncharacterized protein
STRING	Gorai.009G233900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	5e-32	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Gorai.009G233900.1
Entrez Gene	105770322

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]