PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G223100.1 | ||||||||
Common Name | B456_009G223100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 25465.9 Da PI: 8.4269 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.4 | 5.1e-13 | 106 | 136 | 26 | 56 |
-HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 26 saeereeLAkklgLterqVkvWFqNrRakek 56 s+++++ LA++l+L rqV vWFqNrRa+ k Gorai.009G223100.1 106 SRKQKQGLAEQLNLRPRQVEVWFQNRRARTK 136 899**************************98 PP | |||||||
2 | HD-ZIP_I/II | 91.7 | 8.3e-30 | 104 | 170 | 23 | 90 |
HD-ZIP_I/II 23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 + ++K+ la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++lkeen+rL+ke +eL+ + Gorai.009G223100.1 104 VCSRKQKQGLAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLKEENKRLHKELQELK-S 170 446799***********************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0033 | 88 | 142 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-11 | 103 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-12 | 104 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-10 | 105 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.43E-9 | 106 | 139 | No hit | No description |
PROSITE profile | PS50071 | 12.746 | 106 | 138 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.3E-9 | 138 | 171 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.7E-20 | 138 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGLDDICNTG LCLGLGIGCL VKQENISQSD HHQQKKKKPF LKHDQLFPSL SLGPSHDVHG 60 HGESIDLHQR QASSLSLSAV SSFSNSSVKR ERDFGGEEVE LERVCSRKQK QGLAEQLNLR 120 PRQVEVWFQN RRARTKLKQT EVDCELLKKC CETLKEENKR LHKELQELKS LKLTASYYMH 180 LPAATLTLCP SCERVDNGGE APSTSSPFTM GKKSHFFSSY THPSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687248.1 | 1e-146 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-58 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0D2TPA1 | 1e-167 | A0A0D2TPA1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G223100.1 | 1e-167 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22335 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-54 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G223100.1 |
Publications ? help Back to Top | |||
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