PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G221800.1

Common Name

B456_009G221800, LOC105769375

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 142aa MW: 16759.7 Da PI: 7.691

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G221800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.3	3.3e-13	56	105	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++ rr+ +NRe+ArrsR RK++ +e+ +++v L+ eN++Lk++l+ + Gorai.009G221800.1 56 RKKRRMKSNRESARRSRWRKRMHLENITDEVNRLSVENQQLKNRLSAVIN 105 67889999**********************************99987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-12	52	103	No hit	No description
SMART	SM00338	2.5E-14	52	123	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.9E-11	53	103	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	54	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-11	56	110	No hit	No description
CDD	cd14702	5.69E-14	57	108	No hit	No description
PROSITE pattern	PS00036	0	59	74	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MFLSQEADQF QLPVNETGFT REELEELLSF LESNEPVSPN SGSEGSTRAV YSPDERKKRR 60 MKSNRESARR SRWRKRMHLE NITDEVNRLS VENQQLKNRL SAVINQYHIV WRENEQLRSE 120 SEALWAKLLD LYWTLATMQS R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	61	KKRRMK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445431.1	1e-98	PREDICTED: regulatory protein opaque-2-like
TrEMBL	A0A0D2URX3	3e-97	A0A0D2URX3_GOSRA; Uncharacterized protein
STRING	Gorai.009G221800.1	4e-98	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	1e-15	basic leucine-zipper 4

Link Out ? help Back to Top
Phytozome	Gorai.009G221800.1
Entrez Gene	105769375

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]