PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G212600.1
Common NameB456_009G212600, LOC105769230
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 459aa    MW: 49342.7 Da    PI: 10.4679
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G212600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.68.8e-16380431556
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                         +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+  e+ ++ 
  Gorai.009G212600.1 380 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRKKHAEIMEMQ 431
                         79*****************************************999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-12376437IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.519378429IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-15380429No hitNo description
PfamPF001702.6E-13380431IPR004827Basic-leucine zipper domain
CDDcd147076.00E-27380434No hitNo description
SuperFamilySSF579593.13E-11380429No hitNo description
PROSITE patternPS000360383398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MKKTNQHLAL PRRPKRRPQK QPEAQIILNL KNKILMGTNM NFGSNPPPSG DGGGNKPPGN  60
NLLTRQPSIY SLTFDEFQST MGGIGKDFGS MNMDELLRNI WSAEEIQTMA SSGGVLEGNG  120
GLQRQGSLTL PRTLSQKTVD EVWKDISKEY SLGKDGIGGG GGTNNMPQRQ QTLGEMTLEE  180
FLVRAGVVIE DTQLAGKVNN EGFFGGNNTG FEIGFQQGGK GPNLMGTRIP DGGNQINIQA  240
SNLHPNVNGV RSNQHQLAQQ HQHQQPIFPK QTGVGYGAQI PLQSGGQLGS PGIRSGMHGI  300
GDQGISNGLI QAGALQGGGM GMVGLGGAVG VATGSPANQV SSDGIGKSSG DTSSVSPVPY  360
VFNGSMRGRK YSAVEKVAER RQRRMIKNRE SAARSRARKQ AYTMELEAEV AKLKEENQEL  420
RKKHAEIMEM QKNQVIEMVD MQQGAKKRCL RRTQTGPW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445168.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
SwissprotQ9M7Q41e-135AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A0D2TTD00.0A0A0D2TTD0_GOSRA; Uncharacterized protein
STRINGGorai.009G212600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-109abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  3. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]