PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G207200.1

Common Name

B456_009G207200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 341aa MW: 37796.6 Da PI: 9.4757

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G207200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	7.8e-32	133	186	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Gorai.009G207200.1 133 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 186 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.68E-15	130	187	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-28	131	187	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	133	186	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	134	185	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MFLSSNTIMR TAPFPDLSLQ ISPPSVSDCK AKEMAYDVLS GKSIYSDRSS TTDSGSSGSD 60 LSHENGYINP GLGEPTLSLG FEMADLGPPH LQQPRNPHHL HQQHHYQPQI YGRDFKRSAR 120 TMNGGVKRSI RAPRMRWTTT LHAHFVHAVQ LLGGHERATP KSVLELMNVK DLTLAHVKSH 180 LQMYRTVKST DKGSVPHLFV GVSGQGQTDM SLNQRVGIFD LDGRLSSPKA DRNASYSLKL 240 STPSPQTIPQ RTQSDSWPSS METNNFRVSN RGNGLTFKPN DTKVDGDKAV LHMSDRMKER 300 LDSSSMSPSD MFLNLEITLG RPSWQMDYAE SSNELTLLKC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	134	188	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	134	188	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	134	188	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	134	188	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-17	134	188	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP271989	2e-93	KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016666650.1	0.0	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A0D2S561	0.0	A0A0D2S561_GOSRA; Uncharacterized protein
STRING	Gorai.009G207200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6572	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	4e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G207200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]