PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G199300.1
Common NameB456_009G199300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 196aa    MW: 22678.4 Da    PI: 7.5956
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G199300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.33.3e-1365121561
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                         ++ +rk++NRe+ArrsR RK++ ++eL   v++L++ N +  + ++  + ++ + ++
  Gorai.009G199300.1  65 RKRKRKESNRESARRSRMRKQQHLDELVAQVAQLSKDNNQILNSINFTTHHYLNIQA 121
                         6789**********************************9998888777766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-1157109No hitNo description
SMARTSM003381.6E-1861125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.71463126IPR004827Basic-leucine zipper domain
PfamPF001707.2E-1065114IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-1265117No hitNo description
CDDcd147023.10E-1966116No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSPVVSEILR SGFMINSSLR RRTHLVQSFS VVFLYCGNSN SSSSSQLQNS GSEEDLHQQN  60
MMDQRKRKRK ESNRESARRS RMRKQQHLDE LVAQVAQLSK DNNQILNSIN FTTHHYLNIQ  120
AENSVLRAQM MELSQRLDYL NQILSYLNTM SASELVYETD QCFETSTCDH GFTNPFNLPY  180
LNQPIMASPD MFQYY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469RKRKRK
26470RKRKRKE
37784RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5251512e-49HQ525151.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IYAS8 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444846.11e-114PREDICTED: ocs element-binding factor 1-like
RefseqXP_016687604.11e-114PREDICTED: bZIP transcription factor 53-like
SwissprotC0Z2L53e-51BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0D2S4P81e-141A0A0D2S4P8_GOSRA; Uncharacterized protein
STRINGGorai.009G199300.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-30basic leucine-zipper 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]