PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G171600.1

Common Name

B456_009G171600, LOC105770937

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 447aa MW: 50089.7 Da PI: 9.6824

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G171600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.6e-08	4	37	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 rW t+E++ll av ++G+++W+++a+++ +Rt Gorai.009G171600.1 4 ERWGTWEELLLGGAVLRHGTRDWNLVASELR-TRT 37 69***************************.9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	2.1E-6	4	37	IPR001005	SANT/Myb domain
CDD	cd00167	0.00297	5	52	No hit	No description
SuperFamily	SSF47370	7.33E-18	247	359	IPR001487	Bromodomain
SMART	SM00297	1.0E-12	250	357	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	2.8E-15	250	359	IPR001487	Bromodomain
CDD	cd04369	8.80E-15	254	348	No hit	No description
Pfam	PF00439	1.1E-11	263	341	IPR001487	Bromodomain
PROSITE profile	PS50014	9.656	268	338	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MGTERWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRTVAP FGFTPEICKA KYEDLQQRYS 60 GCKAWFEELR KQRMAELRQA LEKTEDSIGS LESKVEGLKA EKRDDSQVIY GSSQTESAIP 120 CLKSEGIEFS SKDKCKDGLS AGSFTQEAET TWPPHCLIPV AVPAEVMDVK QGASLTSERE 180 QISSIDKLFG TFCGGRFLSI RKRRGKRKRK DCSKNAKEGS VGESEFLDPA DVANASWCKE 240 TSASSEDQNR GSSSEVIDDI MGIFSSIAKN DCMSVFRRRL DSQERGRYKK MIRQHRDFDT 300 IRSRIASKSI MSVKELFRDM LLVANNALVF YSKNTREYKS ALLLRHIVTA TLQQHLKEYR 360 SKVPLHKPLA KPRSIHPSHH ERLGNTTNNE TPVVVNSRGC KNTSNAESPP SMESSTFSAQ 420 PRNAVCGYAI QKSESPTKGR KRARAC*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MGTERWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRTVAP FGFTPEICKA KYEDLQQRYS  60
GCKAWFEELR KQRMAELRQA LEKTEDSIGS LESKVEGLKA EKRDDSQVIY GSSQTESAIP  120
CLKSEGIEFS SKDKCKDGLS AGSFTQEAET TWPPHCLIPV AVPAEVMDVK QGASLTSERE  180
QISSIDKLFG TFCGGRFLSI RKRRGKRKRK DCSKNAKEGS VGESEFLDPA DVANASWCKE  240
TSASSEDQNR GSSSEVIDDI MGIFSSIAKN DCMSVFRRRL DSQERGRYKK MIRQHRDFDT  300
IRSRIASKSI MSVKELFRDM LLVANNALVF YSKNTREYKS ALLLRHIVTA TLQQHLKEYR  360
SKVPLHKPLA KPRSIHPSHH ERLGNTTNNE TPVVVNSRGC KNTSNAESPP SMESSTFSAQ  420
PRNAVCGYAI QKSESPTKGR KRARAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	210	RRGKRKRKD
2	438	444	GRKRARA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447765.1	0.0	PREDICTED: uncharacterized protein LOC105770937 isoform X1
TrEMBL	A0A0D2S2U6	0.0	A0A0D2S2U6_GOSRA; Uncharacterized protein
STRING	Gorai.009G171600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7607	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	2e-30	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.009G171600.1
Entrez Gene	105770937

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]