PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G169900.1 | ||||||||
Common Name | B456_009G169900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 152aa MW: 16242.5 Da PI: 7.2846 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.9 | 9.3e-10 | 63 | 87 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP G + +C++C tV Gorai.009G169900.1 63 CGSCRQLLSYPEGTRQAKCSCCETV 87 ************************9 PP | |||||||
2 | zf-LSD1 | 38.2 | 2.3e-12 | 101 | 125 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C lL+YP+G+psV+C++C V Gorai.009G169900.1 101 CDSCALLLMYPYGSPSVKCSSCLSV 125 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.2E-14 | 60 | 90 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-7 | 63 | 87 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.1E-9 | 98 | 126 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-8 | 101 | 125 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MAAAMSLSTT KVSSFSSHLS SRPPPPLFFS GSDPYPVSDR VDTSTASQIA PSPEMAQMAQ 60 MVCGSCRQLL SYPEGTRQAK CSCCETVNFV LEAHQVGLVR CDSCALLLMY PYGSPSVKCS 120 SCLSVTEIGE HNRRPPWSVQ QGQPTPPNSL H* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243102 | 4e-56 | AC243102.1 Gossypium arboreum clone GM226J06-jme, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012443123.1 | 3e-67 | PREDICTED: protein LOL2 | ||||
Swissprot | O65426 | 1e-41 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A0D2TLC6 | 1e-106 | A0A0D2TLC6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G169900.1 | 1e-107 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13611 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 4e-42 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G169900.1 |
Publications ? help Back to Top | |||
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