PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G168300.1

Common Name

B456_009G168300, LOC105770019

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 341aa MW: 37136.2 Da PI: 7.4302

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G168300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	38	98	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Gorai.009G168300.1 38 QQQVLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 98 68999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	21	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-34	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MIISSTANQW PQDHIDEKDL MASTARLMEK PSHEQQQQQQ VLKCPRCDSS NTKFCYYNNY 60 SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVKRP AASATGGASP TSGANIANTP 120 SQPQMDVSST SSHHINPLFY GLANNPSDIN LPFPRFSSRV LGAETVTGYD LQPDLNALGL 180 GFSSGIVSSD TGDGDYRNGF NTNPTKQIQD VVTSNPLLPS YSNIFGSSST TTTPTIASLL 240 ASTLYQHKFM NGGVKNTQLP NQLQALSPFQ DLQMTGNGEN GVTMKDIKVE EAQSRMDWNV 300 PCQNQLDQMG LSDPTDYWST TSVGAWNDPA NFESSVTSLI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM444932	6e-54	AM444932.2 Vitis vinifera contig VV78X179258.2, whole genome shotgun sequence.
GenBank	FQ383010	6e-54	FQ383010.1 Vitis vinifera clone SS0ABG35YE14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446505.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
Refseq	XP_016688040.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A0D2QHR5	0.0	A0A0D2QHR5_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JCL5	0.0	A0A1U8JCL5_GOSHI; dof zinc finger protein DOF1.4-like
STRING	Gorai.009G168300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	3e-50	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G168300.1
Entrez Gene	105770019

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]