PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G165600.1

Common Name

B456_009G165600, LOC105766807

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 278aa MW: 30908.5 Da PI: 8.324

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G165600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.1	2.8e-33	14	107	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkC+++Cv+ap fpa+++++f+ vhk+FG++n++ +l+ ++er++a++sl +eA a+++dPv+G +g++++l+++l++l+ Gorai.009G165600.1 14 ACAACKHQRRKCESNCVFAPFFPASRAESFREVHKIFGVKNMTGILTPRTPDERKKAVESLEWEALAWTQDPVRGPLGLFRRLEEELQHLN 104 7**************************************************************************************9988 PP DUF260 92 ael 94 l Gorai.009G165600.1 105 DLL 107 655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.517	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-31	14	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSNGEEAAPN TRHACAACKH QRRKCESNCV FAPFFPASRA ESFREVHKIF GVKNMTGILT 60 PRTPDERKKA VESLEWEALA WTQDPVRGPL GLFRRLEEEL QHLNDLLDQL VEPYQQNQIN 120 SAGLNGFNHN SVTGRVIVPN SNINATNIGY GSNPYLGIDV PPIDNYDGVP PISSDGLNEN 180 QLVVNNYFPG YYGIPDRLAV FPESGGVDNV AQTSTPSPTL PAKQETMAQR PQIWGPSRRP 240 LTNNHFPLRN HRRGSQQRYQ YGVLQRPASQ SQGRGLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-22	7	108	1	105	LOB family transfactor Ramosa2.1
5ly0_B	4e-22	7	108	1	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441826.1	0.0	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	A0A0D2TR61	0.0	A0A0D2TR61_GOSRA; Uncharacterized protein
STRING	Gorai.009G165600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19603	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-27	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Gorai.009G165600.1
Entrez Gene	105766807

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]