PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G150000.1

Common Name

B456_009G150000, LOC105769437

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 350aa MW: 38920.2 Da PI: 9.2057

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G150000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.3	3.5e-17	23	102	2	73
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er rgk + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++ Gorai.009G150000.1 23 WTVNETMVLIEAKKMDDERRMkrsgdiegRGKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRIAE 102 ***********977666662222222224799************************************99988644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.12	15	87	IPR017877	Myb-like domain
Pfam	PF13837	2.0E-13	22	98	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MKLVMADQGG DNIVTREYRK GNWTVNETMV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW 60 KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRI AERGEGTHSN EGSSYWEMEK 120 NERKVKNLPS NMLRLIYERL EEVVEKKGDQ TAVAAGGSGL IPNIPYVMDR PITSVETSLP 180 PLLQHQLLAP IPAAIPLTLP APPQLPPPPI AAAAAAPLVQ PSPLSYAQPL PTVDSDTSEY 240 SDTPAKRRKR GTGNGEGSSG GTASANNSNE VGTAISKSAS IIAEAIQASE EREERRHKDL 300 VSLHERRLKM EESKTEMDKR GLDGLVDAIN KLANSILALA THKKQSAPK*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MKLVMADQGG DNIVTREYRK GNWTVNETMV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW  60
KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRI AERGEGTHSN EGSSYWEMEK  120
NERKVKNLPS NMLRLIYERL EEVVEKKGDQ TAVAAGGSGL IPNIPYVMDR PITSVETSLP  180
PLLQHQLLAP IPAAIPLTLP APPQLPPPPI AAAAAAPLVQ PSPLSYAQPL PTVDSDTSEY  240
SDTPAKRRKR GTGNGEGSSG GTASANNSNE VGTAISKSAS IIAEAIQASE EREERRHKDL  300
VSLHERRLKM EESKTEMDKR GLDGLVDAIN KLANSILALA THKKQSAPK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445521.1	0.0	PREDICTED: uncharacterized protein LOC105769437 isoform X1
TrEMBL	A0A0D2QGI7	0.0	A0A0D2QGI7_GOSRA; Uncharacterized protein
STRING	Gorai.009G150000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-60	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G150000.1
Entrez Gene	105769437

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]