PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G143000.1
Common NameB456_009G143000, LOC105767361
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 277aa    MW: 30517.4 Da    PI: 8.7808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G143000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT+eE+e l+ +++++G+g Wk I +        ++R+  ++k++w+++
  Gorai.009G143000.1  5 KQKWTAEEEEALLAGITKHGPGKWKNILKDPEfapflTHRSNIDLKDKWRNL 56
                        79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.855161IPR017930Myb domain
SuperFamilySSF466893.3E-16259IPR009057Homeodomain-like
SMARTSM007172.7E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-15456IPR009057Homeodomain-like
PfamPF002491.4E-8556IPR001005SANT/Myb domain
CDDcd116602.30E-21656No hitNo description
SuperFamilySSF467853.43E-16113195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.2E-17114179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.8E-14116182IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.671116184IPR005818Linker histone H1/H5, domain H15
PfamPF005384.5E-11118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGI TKHGPGKWKN ILKDPEFAPF LTHRSNIDLK DKWRNLSVST  60
STQGARDKSR APKVKAIVAS LPNTPNSSAP VASRAHNVTS DTVVGDSSNN GIDGKNAPRY  120
NTMIFEALST IKDTNGCDIS AIVSYIEQRH EVPPNFRRLL SSRLRRLVSQ GKLEKVQNCY  180
KIREDTLMGT ETPTPKQKDV RLRQNSDAIG SGETVEEAAI TTAYKVAEAE NKSFLAAEAV  240
KEAERVSKMA EDTDSMLQLV KEIYEQCSRG ETVILV*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442322.10.0PREDICTED: telomere repeat-binding factor 4
SwissprotF4I7L13e-89TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0D2QFU50.0A0A0D2QFU5_GOSRA; Uncharacterized protein
STRINGGorai.009G143000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-92MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]