PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G127000.3

Common Name

B456_009G127000, LOC105768018

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 670aa MW: 77433.4 Da PI: 6.6649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G127000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	2.9e-22	62	143	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++el+HnH + Gorai.009G127000.3 62 FYNCYAKEQGFGVRVSNTWYR-KTKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENKRWRIIEVELDHNHLI 143 9**************9998.67779**********99888.....*********************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-19	62	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-24	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.174	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-5	563	590	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.0E-4	565	585	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MDGVSLNTDP VVDDDADADE FEIEGDCGMA KCISQSGVIQ GENPLPPVVG MEFDSYEDVY 60 YFYNCYAKEQ GFGVRVSNTW YRKTKERYRG KLSCSSAGFK KKSEANRPRP ETRTGCPAMI 120 KFRLMENKRW RIIEVELDHN HLISAVSGKF YKSHKQLGIG TKRALHLDSA EEVQKVRLFR 180 TVVIDVEGNG SVEVSSGEFR SSHNQTSQLR LKDGDAQAIH NYFSHLQLID PNFFYVVDLN 240 EKGCLRNLFW SNTRSRVAYG YFGDVVAVDT ICLTDKYQVP LVSFIGVNHH GQSVLLGCGL 300 LAGDTIEACT WLFRAWLTCM LGRPPQVIIT DQCRTLQAAV ADVFPRAFHC LCLPRIMQKV 360 PEKLGGLYEY ESIRMALNNA VYYSLRPEEF EATWEDMIHH YRLRNHVWLQ MLYEDRRQWV 420 PVYLKEIFLA GMLLTRPNEV VESFFDGYLD KHTSLKEFLD KYDQALQANH QLEVLADMES 480 RNSGFMLQSR CYFELQLAKL YTNNILRKFE REVEGMYSCF CTRQINGEGE VITYMVREQI 540 EVDGNRRECR DFEVLYNATE MEVLCVCGLF NFKGYLCRHA LSVLHQNGIE EIPPQYVVSR 600 WRKDIKRSYV LNHSNGGIDI NNPVHRYDHL YKCIMQVVEE GRKSEVRYKD TVQALDQILR 660 KLNLVEGRL*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MDGVSLNTDP VVDDDADADE FEIEGDCGMA KCISQSGVIQ GENPLPPVVG MEFDSYEDVY  60
YFYNCYAKEQ GFGVRVSNTW YRKTKERYRG KLSCSSAGFK KKSEANRPRP ETRTGCPAMI  120
KFRLMENKRW RIIEVELDHN HLISAVSGKF YKSHKQLGIG TKRALHLDSA EEVQKVRLFR  180
TVVIDVEGNG SVEVSSGEFR SSHNQTSQLR LKDGDAQAIH NYFSHLQLID PNFFYVVDLN  240
EKGCLRNLFW SNTRSRVAYG YFGDVVAVDT ICLTDKYQVP LVSFIGVNHH GQSVLLGCGL  300
LAGDTIEACT WLFRAWLTCM LGRPPQVIIT DQCRTLQAAV ADVFPRAFHC LCLPRIMQKV  360
PEKLGGLYEY ESIRMALNNA VYYSLRPEEF EATWEDMIHH YRLRNHVWLQ MLYEDRRQWV  420
PVYLKEIFLA GMLLTRPNEV VESFFDGYLD KHTSLKEFLD KYDQALQANH QLEVLADMES  480
RNSGFMLQSR CYFELQLAKL YTNNILRKFE REVEGMYSCF CTRQINGEGE VITYMVREQI  540
EVDGNRRECR DFEVLYNATE MEVLCVCGLF NFKGYLCRHA LSVLHQNGIE EIPPQYVVSR  600
WRKDIKRSYV LNHSNGGIDI NNPVHRYDHL YKCIMQVVEE GRKSEVRYKD TVQALDQILR  660
KLNLVEGRL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443157.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBL	A0A0D2TPE0	0.0	A0A0D2TPE0_GOSRA; Uncharacterized protein
STRING	Gorai.009G127000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Gorai.009G127000.3
Entrez Gene	105768018

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]