PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G127000.1

Common Name

B456_009G127000, LOC105768018

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 671aa MW: 77564.6 Da PI: 6.6649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G127000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	2.9e-22	63	144	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++el+HnH + Gorai.009G127000.1 63 FYNCYAKEQGFGVRVSNTWYR-KTKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENKRWRIIEVELDHNHLI 144 9**************9998.67779**********99888.....*********************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-19	63	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-24	266	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.174	553	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-5	564	591	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.0E-4	566	586	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MMDGVSLNTD PVVDDDADAD EFEIEGDCGM AKCISQSGVI QGENPLPPVV GMEFDSYEDV 60 YYFYNCYAKE QGFGVRVSNT WYRKTKERYR GKLSCSSAGF KKKSEANRPR PETRTGCPAM 120 IKFRLMENKR WRIIEVELDH NHLISAVSGK FYKSHKQLGI GTKRALHLDS AEEVQKVRLF 180 RTVVIDVEGN GSVEVSSGEF RSSHNQTSQL RLKDGDAQAI HNYFSHLQLI DPNFFYVVDL 240 NEKGCLRNLF WSNTRSRVAY GYFGDVVAVD TICLTDKYQV PLVSFIGVNH HGQSVLLGCG 300 LLAGDTIEAC TWLFRAWLTC MLGRPPQVII TDQCRTLQAA VADVFPRAFH CLCLPRIMQK 360 VPEKLGGLYE YESIRMALNN AVYYSLRPEE FEATWEDMIH HYRLRNHVWL QMLYEDRRQW 420 VPVYLKEIFL AGMLLTRPNE VVESFFDGYL DKHTSLKEFL DKYDQALQAN HQLEVLADME 480 SRNSGFMLQS RCYFELQLAK LYTNNILRKF EREVEGMYSC FCTRQINGEG EVITYMVREQ 540 IEVDGNRREC RDFEVLYNAT EMEVLCVCGL FNFKGYLCRH ALSVLHQNGI EEIPPQYVVS 600 RWRKDIKRSY VLNHSNGGID INNPVHRYDH LYKCIMQVVE EGRKSEVRYK DTVQALDQIL 660 RKLNLVEGRL *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MMDGVSLNTD PVVDDDADAD EFEIEGDCGM AKCISQSGVI QGENPLPPVV GMEFDSYEDV  60
YYFYNCYAKE QGFGVRVSNT WYRKTKERYR GKLSCSSAGF KKKSEANRPR PETRTGCPAM  120
IKFRLMENKR WRIIEVELDH NHLISAVSGK FYKSHKQLGI GTKRALHLDS AEEVQKVRLF  180
RTVVIDVEGN GSVEVSSGEF RSSHNQTSQL RLKDGDAQAI HNYFSHLQLI DPNFFYVVDL  240
NEKGCLRNLF WSNTRSRVAY GYFGDVVAVD TICLTDKYQV PLVSFIGVNH HGQSVLLGCG  300
LLAGDTIEAC TWLFRAWLTC MLGRPPQVII TDQCRTLQAA VADVFPRAFH CLCLPRIMQK  360
VPEKLGGLYE YESIRMALNN AVYYSLRPEE FEATWEDMIH HYRLRNHVWL QMLYEDRRQW  420
VPVYLKEIFL AGMLLTRPNE VVESFFDGYL DKHTSLKEFL DKYDQALQAN HQLEVLADME  480
SRNSGFMLQS RCYFELQLAK LYTNNILRKF EREVEGMYSC FCTRQINGEG EVITYMVREQ  540
IEVDGNRREC RDFEVLYNAT EMEVLCVCGL FNFKGYLCRH ALSVLHQNGI EEIPPQYVVS  600
RWRKDIKRSY VLNHSNGGID INNPVHRYDH LYKCIMQVVE EGRKSEVRYK DTVQALDQIL  660
RKLNLVEGRL *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443157.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBL	A0A0D2TPE0	0.0	A0A0D2TPE0_GOSRA; Uncharacterized protein
STRING	Gorai.009G127000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Gorai.009G127000.1
Entrez Gene	105768018

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]