PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G112200.1
Common NameB456_009G112200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 369aa    MW: 40452.4 Da    PI: 8.9362
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G112200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.29.6e-10140189554
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                         k+ +r ++NR++A+rsR RK +++   e+kv++Le+    L +++++ k+
  Gorai.009G112200.1 140 KKLKRVISNRLSAQRSRIRKIQRLCDMEKKVQSLETLVAVLSSKVQREKD 189
                         899**********************************9999999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.8E-8133186No hitNo description
SMARTSM003383.2E-6136207IPR004827Basic-leucine zipper domain
PfamPF077162.1E-7138186IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.036138201IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.96E-8140194No hitNo description
CDDcd147035.22E-14141190No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNGKNKMIEQ QKPAAGSGSG SSSASAWPKY SIGASAIPTR FSFMKPANLP ICPTSFNGVN  60
PKPYSMNQVG GAGSSAGASS SATKTSFIQG CHSFAVGGEK TNTDKPPMPP VENSARTEAA  120
NVDVAQVRGG HHPEQNMDPK KLKRVISNRL SAQRSRIRKI QRLCDMEKKV QSLETLVAVL  180
SSKVQREKDK HFLLRIEQRE LRERIEAFAN RETMVDARIE KRRAEVESLR QPQFTPQQQQ  240
MQVQTRPVWE QGLPTEQKMN PCPNNSGFGQ AVYANSNQGG GGDGDYMGME INRLNQLSLH  300
QKNPGDVMMP DRQTSGGQLP NVGLDQYGVG ELQNPSLCEP NPQQDGSYDS DIEEIEQILN  360
FDPRNGLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684355.10.0PREDICTED: uncharacterized protein LOC107902741
TrEMBLA0A0D2TNC20.0A0A0D2TNC2_GOSRA; Uncharacterized protein
STRINGGorai.009G112200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-12bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]