PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G110800.1
Common NameB456_009G110800, LOC105767570
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 323aa    MW: 36728.1 Da    PI: 8.0816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G110800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.4e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+teEd +l ++++++G+g +W + +++ g++R++k+c++rw++yl
  Gorai.009G110800.1 14 KGPWSTEEDSKLREYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding40.84.9e-1369111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Gorai.009G110800.1  69 GEFTDEEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.238962IPR017930Myb domain
SuperFamilySSF466891.09E-2711109IPR009057Homeodomain-like
SMARTSM007172.4E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241569IPR009057Homeodomain-like
CDDcd001671.02E-81662No hitNo description
PROSITE profilePS5129422.92263117IPR017930Myb domain
SMARTSM007171.9E-1267115IPR001005SANT/Myb domain
PfamPF002491.2E-1169111IPR001005SANT/Myb domain
CDDcd001672.17E-870113No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSTE EDSKLREYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
SMTSQPHRKP PPFPSSHHTP SVSFSSLSSL YKDCTTYQDP TRSFTAFEPM SSVQSDLLSN  180
NNTTLATNSS LIHTPEALVN YMQYYPVKEN FLMFGSESSC TSSDGSSGHI SFGREMKQEN  240
MSYFQGFCAT NGYEDNHNFM LNPGTNNGGK NVNQWAEKPR EYNLENDLED FKRLISSSSN  300
NCCNNNFIDE NKTQEKIMYF YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527220.0KM052722.1 Gossypium hirsutum RAX-like transcription factor RAX3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313901.10.0transcription factor RAX2-like
RefseqXP_012442591.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A089ND580.0A0A089ND58_GOSHI; RAX-like transcription factor RAX3
TrEMBLA0A0D2QDM10.0A0A0D2QDM1_GOSRA; Uncharacterized protein
STRINGGorai.009G110800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]