PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G107900.3

Common Name

B456_009G107900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 277aa MW: 30380.7 Da PI: 10.6813

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G107900.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.2	2.6e-19	195	228	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C +t+Tp+WR+gp g+ktLCnaCG++yr+ + Gorai.009G107900.3 195 CTHCEVTETPQWREGPMGPKTLCNACGVRYRSGR 228 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.4E-17	189	239	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.477	193	225	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.65E-15	194	252	No hit	No description
CDD	cd00202	1.63E-14	194	241	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.4E-14	194	226	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	195	220	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.0E-17	195	228	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MNFYSLPLTK IPKSSIDAKE SLSLPPFSFS SDPNKKQRTR LQPSSSNQCD GSSQLNQLSS 60 TTSITPHSDC TDVKGSTWFQ TSSPVSVLES SSPCSAANPT PIDPKLSFLV KKRGRSKRRP 120 ASTFNQQFIF SSISSTSSAS RGTNYVVGSE SESENNPTEK PAKKRQKKKK NLTLLSGCNE 180 TKKPPSLQPI VIMKCTHCEV TETPQWREGP MGPKTLCNAC GVRYRSGRLF PEYRPAASPT 240 FVASMHSNSH KKVVEMRKKA KLPLSLSSIP PKMSFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016688669.1	1e-160	PREDICTED: GATA transcription factor 10-like isoform X2
TrEMBL	A0A0D2RY95	0.0	A0A0D2RY95_GOSRA; Uncharacterized protein
STRING	Gorai.009G107900.1	1e-165	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	6e-37	GATA transcription factor 11

Link Out ? help Back to Top
Phytozome	Gorai.009G107900.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]