PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G107900.1

Common Name

B456_009G107900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 235aa MW: 25748.4 Da PI: 10.6791

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G107900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.5	2.1e-19	153	186	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C +t+Tp+WR+gp g+ktLCnaCG++yr+ + Gorai.009G107900.1 153 CTHCEVTETPQWREGPMGPKTLCNACGVRYRSGR 186 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.4E-17	147	197	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.477	151	183	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.1E-14	152	184	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.03E-14	152	199	No hit	No description
SuperFamily	SSF57716	4.75E-15	152	210	No hit	No description
Pfam	PF00320	2.4E-17	153	186	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	153	178	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MFNTRVCDGS SQLNQLSSTT SITPHSDCTD VKGSTWFQTS SPVSVLESSS PCSAANPTPI 60 DPKLSFLVKK RGRSKRRPAS TFNQQFIFSS ISSTSSASRG TNYVVGSESE SENNPTEKPA 120 KKRQKKKKNL TLLSGCNETK KPPSLQPIVI MKCTHCEVTE TPQWREGPMG PKTLCNACGV 180 RYRSGRLFPE YRPAASPTFV ASMHSNSHKK VVEMRKKAKL PLSLSSIPPK MSFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443598.1	1e-165	PREDICTED: GATA transcription factor 11-like
TrEMBL	A0A0D2TN36	1e-170	A0A0D2TN36_GOSRA; Uncharacterized protein
STRING	Gorai.009G107900.1	1e-171	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	4e-37	GATA transcription factor 11

Link Out ? help Back to Top
Phytozome	Gorai.009G107900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]