PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G104200.2
Common NameB456_009G104200, LOC105770460
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 472aa    MW: 51772.3 Da    PI: 6.7096
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G104200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-17155204155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.009G104200.2 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 204
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-9155204IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16155213IPR016177DNA-binding domain
SMARTSM003806.4E-32156218IPR001471AP2/ERF domain
PROSITE profilePS5103217.754156212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-17156213IPR001471AP2/ERF domain
CDDcd000187.96E-24156211No hitNo description
CDDcd000183.79E-13247292No hitNo description
SuperFamilySSF541712.16E-6247291IPR016177DNA-binding domain
SMARTSM003804.5E-13248296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MLDLNLNVAS TESTQDSACA TLVTNKLNEY CGNQMDESET SNSSIVNDDD ESCSTRANGD  60
AFTLSFDILK VGSGETEYGN DGAPVVVTKE LFPVKRVGED FRSPEGQSSG SSNYNKWIDL  120
SFERKEVADP RVMQQQQPSQ TTVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHS AARAYDRAAI KFRGVDADIN FSLSDYEDDM KQMKNLTKEE FVHILRRQST  240
GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAVTNFE PSSYEGDIIL  300
DTSNEGNTHN LDLNLGISPP VGNGSVENEE HPHFHSGTSD INGGKSLRAE NPAAATVGPA  360
YKGLAGTSDQ PILWNSVYPR CFPSEERAMV RRVDIGPPQG PPNWTCQMRS QVRATATPLF  420
STAASSGFSY LASTPAAAKP INQMTQNLCF TSSTATATNT AEINFQMQPP P*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5261141e-67HQ526114.1 Gossypium herbaceum clone NBRI_D_895 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447126.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
SwissprotQ9SK031e-128RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0D2UJH00.0A0A0D2UJH0_GOSRA; Uncharacterized protein
STRINGGorai.009G104200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-129related to AP2.7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]