PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G098300.1

Common Name

B456_009G098300, LOC105769110

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 702aa MW: 77592.4 Da PI: 8.792

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G098300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	583	633	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++l Gorai.009G098300.1 583 RRPFSISEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTLL 633 56788899****************9988889************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	8.76E-6	387	477	IPR029071	Ubiquitin-related domain
PROSITE profile	PS51294	15.642	578	637	IPR017930	Myb domain
SMART	SM00717	2.6E-6	582	635	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-10	583	634	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.95E-16	584	665	IPR009057	Homeodomain-like
CDD	cd11660	5.23E-17	584	634	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MVLQKRLDYG FNGYQVPTIP RATRSARKRV PFRKRVEGNR ISAFDLLATV AGTLLLDKES 60 SPASNKAWNA EDQSAVEKNN VKEERQDGDQ SLKLETCNVS ELVPQTNDPN YSSRESPSLQ 120 NGTQFGVTSA ITTSERLDSQ KLINGKIKNE MGGLACKVET GPFVSRTPGD CVEPVSENKV 180 LTDEELDRTN KASSGEVADK CPLEDPLVLD GKPPAVVSSD SSIKAPSFGE HDPFISFPIQ 240 QYDVNVVSRD DDEKSSGCTH PSPIREPFRS TPRIGDRRIR KILASRYWKV ALRSKNATYS 300 NYDENLKSGY CNRSTYKRLR SGRNFPFKKR KFLHYTSESN SDGGTIGEGI SDLPEKNING 360 KASILYSKMH GVTGESSSLA DQRKSFNSRD PHVKLRIKSF RVPELFIEIP ESATVGSLKR 420 TVKEAVTAIL GGGLCVGVLL QGKKVRDDNK TLLQTGISRD NQMDSLGFSL EPNPSHTSPS 480 LCPGGSPLTL PHDIPLPLAR YPANPGLVNQ VTCHPSTEPC IPNACDFIES NNDCTASPTD 540 MFDKSTTESK ALVAVPAMSV ETLAAVPVHK KSKQSEVAQR RIRRPFSISE VEALVQAVEK 600 LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLLHTARISP QQRRGEPVPQ ELLDRVLNAH 660 TYWSQQQAKQ QQQQLPESCL PHYNSTMIGS GRCDDDENIL G*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MVLQKRLDYG FNGYQVPTIP RATRSARKRV PFRKRVEGNR ISAFDLLATV AGTLLLDKES  60
SPASNKAWNA EDQSAVEKNN VKEERQDGDQ SLKLETCNVS ELVPQTNDPN YSSRESPSLQ  120
NGTQFGVTSA ITTSERLDSQ KLINGKIKNE MGGLACKVET GPFVSRTPGD CVEPVSENKV  180
LTDEELDRTN KASSGEVADK CPLEDPLVLD GKPPAVVSSD SSIKAPSFGE HDPFISFPIQ  240
QYDVNVVSRD DDEKSSGCTH PSPIREPFRS TPRIGDRRIR KILASRYWKV ALRSKNATYS  300
NYDENLKSGY CNRSTYKRLR SGRNFPFKKR KFLHYTSESN SDGGTIGEGI SDLPEKNING  360
KASILYSKMH GVTGESSSLA DQRKSFNSRD PHVKLRIKSF RVPELFIEIP ESATVGSLKR  420
TVKEAVTAIL GGGLCVGVLL QGKKVRDDNK TLLQTGISRD NQMDSLGFSL EPNPSHTSPS  480
LCPGGSPLTL PHDIPLPLAR YPANPGLVNQ VTCHPSTEPC IPNACDFIES NNDCTASPTD  540
MFDKSTTESK ALVAVPAMSV ETLAAVPVHK KSKQSEVAQR RIRRPFSISE VEALVQAVEK  600
LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLLHTARISP QQRRGEPVPQ ELLDRVLNAH  660
TYWSQQQAKQ QQQQLPESCL PHYNSTMIGS GRCDDDENIL G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	8e-56	567	671	1	105	Telomere binding protein TBP1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1661	0.0	flower\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964374	1e-65	JX964374.1 Gossypium hirsutum clone NBRI_TRANS-643 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444989.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X1
Refseq	XP_012444990.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X1
Refseq	XP_012444991.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X1
Refseq	XP_012444992.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X1
Refseq	XP_012444993.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X1
Refseq	XP_012444994.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBL	A0A0D2TGQ1	0.0	A0A0D2TGQ1_GOSRA; Uncharacterized protein
STRING	Gorai.009G098300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3240	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-141	TRF-like 2

Link Out ? help Back to Top
Phytozome	Gorai.009G098300.1
Entrez Gene	105769110

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]