PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G083500.1

Common Name

B456_009G083500, LOC105770859

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 411aa MW: 45820.6 Da PI: 8.7635

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G083500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159	1.9e-49	19	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrF+Ptd el+++yL+kk+eg + + evi+e++i+++ePwdLp k+v ++++ew+fF+ r +ky++g++++rat++gyWkatgk++ Gorai.009G083500.1 19 MFPGFRFSPTDVELISYYLTKKLEGYEKCV-EVIPEIEICRYEPWDLPdKSVIKSDNEWFFFCARGRKYPNGSQSRRATEQGYWKATGKER 108 579**********************777.99***********777777899****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++++g+k+tLvf++grapkge+t+W+mhey + Gorai.009G083500.1 109 NVKS-GSNVIGTKRTLVFHTGRAPKGERTEWIMHEYCM 145 .99***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-55	10	160	IPR003441	NAC domain
PROSITE profile	PS51005	52.473	19	161	IPR003441	NAC domain
Pfam	PF02365	7.9E-25	21	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MAGEGVSRET QMSIEASSMF PGFRFSPTDV ELISYYLTKK LEGYEKCVEV IPEIEICRYE 60 PWDLPDKSVI KSDNEWFFFC ARGRKYPNGS QSRRATEQGY WKATGKERNV KSGSNVIGTK 120 RTLVFHTGRA PKGERTEWIM HEYCMNGKSQ DSLVVCRLRK NSEFRLNNTS SRAPRNAPQL 180 SPIRDSNCAT SNGGADQTGT YKGDKAYLKK GTSSYDSHSI EQFDSASESE QKLSNEVGAT 240 DSSTPQKDSD AEEDYFAEIL KDDIIKLDET PLSARPDISP RIASSSDAGQ RRREQPRKEN 300 EPHVAHLQGT ANRRIKLRKP KAADYVVAAK ASTELERGVG EMSIDKLTSP KSGDSPKWLL 360 SLFAPSTANL RFIYATFVIL TLVALFLTVL LGGFQACKKL QIYATLLNNL *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MAGEGVSRET QMSIEASSMF PGFRFSPTDV ELISYYLTKK LEGYEKCVEV IPEIEICRYE  60
PWDLPDKSVI KSDNEWFFFC ARGRKYPNGS QSRRATEQGY WKATGKERNV KSGSNVIGTK  120
RTLVFHTGRA PKGERTEWIM HEYCMNGKSQ DSLVVCRLRK NSEFRLNNTS SRAPRNAPQL  180
SPIRDSNCAT SNGGADQTGT YKGDKAYLKK GTSSYDSHSI EQFDSASESE QKLSNEVGAT  240
DSSTPQKDSD AEEDYFAEIL KDDIIKLDET PLSARPDISP RIASSSDAGQ RRREQPRKEN  300
EPHVAHLQGT ANRRIKLRKP KAADYVVAAK ASTELERGVG EMSIDKLTSP KSGDSPKWLL  360
SLFAPSTANL RFIYATFVIL TLVALFLTVL LGGFQACKKL QIYATLLNNL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-41	18	160	16	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-41	18	160	16	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-41	18	160	16	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-41	18	160	16	164	NO APICAL MERISTEM PROTEIN
3swm_A	1e-41	18	160	19	167	NAC domain-containing protein 19
3swm_B	1e-41	18	160	19	167	NAC domain-containing protein 19
3swm_C	1e-41	18	160	19	167	NAC domain-containing protein 19
3swm_D	1e-41	18	160	19	167	NAC domain-containing protein 19
3swp_A	1e-41	18	160	19	167	NAC domain-containing protein 19
3swp_B	1e-41	18	160	19	167	NAC domain-containing protein 19
3swp_C	1e-41	18	160	19	167	NAC domain-containing protein 19
3swp_D	1e-41	18	160	19	167	NAC domain-containing protein 19
4dul_A	1e-41	18	160	16	164	NAC domain-containing protein 19
4dul_B	1e-41	18	160	16	164	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	318	NRRIKLRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in plant cell division. {ECO:0000269\|PubMed:16803883}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847239	0.0	KC847239.1 Gossypium hirsutum NAC domain protein NAC62 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313909.1	0.0	NAC domain-containing protein 89
Refseq	XP_012447666.1	0.0	PREDICTED: NAC domain-containing protein 89
Swissprot	Q94F58	1e-100	NAC89_ARATH; NAC domain-containing protein 89
TrEMBL	A0A0D2UIG0	0.0	A0A0D2UIG0_GOSRA; Uncharacterized protein
TrEMBL	W6JBA9	0.0	W6JBA9_GOSHI; NAC domain protein NAC62
STRING	Gorai.009G083500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10453	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	1e-103	NAC domain containing protein 89

Link Out ? help Back to Top
Phytozome	Gorai.009G083500.1
Entrez Gene	105770859

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]