PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G077100.1

Common Name

B456_009G077100, LOC105770541

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 273aa MW: 30284.9 Da PI: 5.2991

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G077100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.7	1.3e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++aded+ +i+ +P l+ska elf+ +l r++ + + +t++ s ++++v+ ++fdfl +iv + Gorai.009G077100.1 6 DTRFPAARIKKIMQADEDIGKIAMAVPLLVSKALELFLQDLCDRTYEITMMKGAKTINSSHLKQCVQGFNVFDFLREIVGK 86 5789************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.5E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	9.6E-21	3	88	IPR009072	Histone-fold
Pfam	PF00808	3.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MKRKLDTRFP AARIKKIMQA DEDIGKIAMA VPLLVSKALE LFLQDLCDRT YEITMMKGAK 60 TINSSHLKQC VQGFNVFDFL REIVGKVPDL GGLDAATEDC HVPKKRKVAD DDESKKSRMD 120 ESCHVTSSSR GRGRGRGRGQ GRGRQTAGRE TAAHCGKFED DPNISYFEEK HALSLERHVP 180 DDAVESDESK KHNHAGKNIK TPVRNIDLNA DLDENGDLIT SIATASPRTD DIPENREEYP 240 GWSLCEIEKM AIDPIKLADS NGGIDDEDYD EV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGQGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447241.1	0.0	PREDICTED: dr1-associated corepressor homolog
TrEMBL	A0A0D2TFH1	0.0	A0A0D2TFH1_GOSRA; Uncharacterized protein
STRING	Gorai.009G077100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-60	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G077100.1
Entrez Gene	105770541

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]