PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G071400.2
Common NameB456_009G071400, LOC105768666
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family EIL
Protein Properties Length: 602aa    MW: 67798.2 Da    PI: 5.9177
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G071400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3433.12.6e-132383971334
                         XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
                         +el++r wkd+++l+r+ker+k     + +a++++ks++ ++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gasd++
  Gorai.009G071400.2  38 DELERRIWKDRIKLRRIKEREKIA---ALQAVEKQKSKQASDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNI 125
                         79******************9974...45669*********************************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS
                EIN3  92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182
                         r+WWkekv+fd+ngpaai+ky+a++l+ s++++   ++ +++ sl++lqD+tlgSLLs+lmqhc+ppqr++plekgv+pPWWPtG+e+ww 
  Gorai.009G071400.2 126 RSWWKEKVKFDKNGPAAIAKYDAECLAISESDNI--KNGNSQCSLQDLQDATLGSLLSSLMQHCKPPQRKYPLEKGVPPPWWPTGNEEWWV 214
                         *****************************77666..89***************************************************** PP

                         HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX...XX..... CS
                EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah...ss..... 265
                         +lgl++ q+ ppykkphdlkk+wkv+vLtavikhmsp+i++ir+++ qsk+lqdkm+akes+++l vl++ee+++++ s +   ss     
  Gorai.009G071400.2 215 KLGLQQGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVHQSKCLQDKMTAKESAVWLGVLGREEALIQQPSCDkgiSSitekp 304
                         ********9.9*******************************************************************9996653366666 PP

                         .XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.......................XXXXXXXXXXXXXXXXXXXXX......XXX CS
                EIN3 266 .slrkqspkvtlsceqkedvegkkeskikhvqavktta.......................gfpvvrkrkkkpsesakvsskevsrtcqss 332
                            r+++++  +s ++++dv+g ++ + + ++++++++                        ++ + +rk+++++ +    ++v ++ +++
  Gorai.009G071400.2 305 qGGRDGKKRPAVSIDSDYDVDGVDDGRGSVSSKEDRRDqpidvepiayinnddshpvqenePVEKQPRRKRPRKRTNHGDRQNVPSHVDKQ 395
                         65667999999999999****8877777777777776679999999999999999999866555666677666666666666666665555 PP

                         XX CS
                EIN3 333 qf 334
                          +
  Gorai.009G071400.2 396 LV 397
                         55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.7E-12538285No hitNo description
Gene3DG3DSA:1.10.3180.102.8E-70161292IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.75E-61166288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAEFEEIGAD ISSDLEVDDI RCENIAEKDV SDEEIEADEL ERRIWKDRIK LRRIKEREKI  60
AALQAVEKQK SKQASDQARR KKMSRAQDGI LKYMLKLMEV CKARGFVYGI IPEKGKPVSG  120
ASDNIRSWWK EKVKFDKNGP AAIAKYDAEC LAISESDNIK NGNSQCSLQD LQDATLGSLL  180
SSLMQHCKPP QRKYPLEKGV PPPWWPTGNE EWWVKLGLQQ GQSPPYKKPH DLKKMWKVGV  240
LTAVIKHMSP DIAKIRRHVH QSKCLQDKMT AKESAVWLGV LGREEALIQQ PSCDKGISSI  300
TEKPQGGRDG KKRPAVSIDS DYDVDGVDDG RGSVSSKEDR RDQPIDVEPI AYINNDDSHP  360
VQENEPVEKQ PRRKRPRKRT NHGDRQNVPS HVDKQLVPSP DEHVNAELRS PVPDINQTDA  420
SFPEYNMPAT QQENDASTML MHGEKHLIVQ SELPAIPCAN EIFTQSMHVG GRPMLYPSVQ  480
QTELHHRAAY EFYNPSVEFR HCRDGQQIQM GMNVPQIGPE NGIDVSVPAG NDHVITGGEL  540
HHYMKDPFHD EQDRAVHNPF GSPTSDPSFY GGFNSPFELP FDGTSSLEEL LDDDLIQYFG  600
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A5e-731652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371377RRKRPRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444193.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein isoform X2
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A0D2UHR50.0A0A0D2UHR5_GOSRA; Uncharacterized protein
STRINGGorai.009G071400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-173ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]