PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G070200.4

Common Name

B456_009G070200, LOC105767600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 174aa MW: 19394.3 Da PI: 7.3776

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G070200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.7	1.9e-19	119	156	1	36
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C+ nC+t +Tp+WRrgp g+ktLCnaCG++yrk+g+k Gorai.009G070200.4 119 CTnyNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEGEK 156 55559******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	9.0E-13	115	166	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	6.3E-15	115	165	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.62E-13	115	164	No hit	No description
Pfam	PF00320	5.0E-17	119	156	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.861	123	169	IPR000679	Zinc finger, GATA-type
CDD	cd00202	2.37E-13	123	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MPEAPQQHFN GGQYAAWPSP DQIGNGSSAH NMNYPNVFNN FSGPSVEFPP YDTTNSYNYV 60 TPPPPPPLHE LPPNSYTLLD VPPRRAAQLQ QREFESSSGL SLGQGQRGYG LYNDPNKRCT 120 NYNCNTNDTP MWRRGPLGPK TLCNACGIKY RKEGEKRKAR EGKDGEQQFD LNE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580047	1e-47	JX580047.1 Gossypium hirsutum clone NBRI_GE12403 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442627.1	1e-126	PREDICTED: GATA transcription factor 29
TrEMBL	A0A0D2RVN2	1e-125	A0A0D2RVN2_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TL01	1e-124	A0A0D2TL01_GOSRA; Uncharacterized protein
STRING	Gorai.009G070200.1	1e-125	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	6e-17	GATA transcription factor 29

Link Out ? help Back to Top
Phytozome	Gorai.009G070200.4
Entrez Gene	105767600

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]