PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G070200.1
Common NameB456_009G070200, LOC105767600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 235aa    MW: 26025.6 Da    PI: 6.1108
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G070200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19180217136
                GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                         C+  nC+t +Tp+WRrgp g+ktLCnaCG++yrk+g+k
  Gorai.009G070200.1 180 CTnyNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEGEK 217
                         55559******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.23E-13176225No hitNo description
SMARTSM004019.0E-13176227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14176226IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.0E-17180217IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.861184230IPR000679Zinc finger, GATA-type
CDDcd002027.78E-14184229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDNSPWFNQA AAEMNGQNND NNNAGNSRVD LTLKLGLPLF NPLQNPALYH NIQQGPVNEG  60
AMPEAPQQHF NGGQYAAWPS PDQIGNGSSA HNMNYPNVFN NFSGPSVEFP PYDTTNSYNY  120
VTPPPPPPLH ELPPNSYTLL DVPPRRAAQL QQREFESSSG LSLGQGQRGY GLYNDPNKRC  180
TNYNCNTNDT PMWRRGPLGP KTLCNACGIK YRKEGEKRKA REGKDGEQQF DLNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5800471e-47JX580047.1 Gossypium hirsutum clone NBRI_GE12403 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442627.11e-172PREDICTED: GATA transcription factor 29
TrEMBLA0A0D2TL011e-171A0A0D2TL01_GOSRA; Uncharacterized protein
STRINGGorai.009G070200.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-16GATA transcription factor 29
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]