PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G045000.1

Common Name

B456_009G045000, LOC105769521

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 321aa MW: 35554 Da PI: 9.4992

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G045000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.3	5e-19	188	221	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Gorai.009G045000.1 188 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 221 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	13.086	182	218	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.18E-13	182	223	No hit	No description
SMART	SM00401	4.6E-19	182	234	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.3E-15	186	222	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.83E-13	187	217	No hit	No description
PROSITE pattern	PS00344	0	188	213	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	8.3E-17	188	221	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MTPLYDLNSP PSPFPLEDLK HHHHLQLFLS LPQHTASSSS AHHPTFFSST DAAATHKPQE 60 PKPYDLKVNN YVSHDGGGGS SDIQQAISSS SSFLESAAVD LSLSRNRKDD GDDYESVSDR 120 NNGSSVELKW MSSKMRLTKK MMMNSNCSGP PPLPHNTAAV NDSKYQYPIQ DRDETNYFSK 180 TNNAIRVCSD CNTTTTPLWR SGPRGPKSLC NACGIRQRKA RRALEAAAAN GETVAASMKI 240 RVHHNKKEIK KSRTVGQYKK ELKSKSGNTC LHHHHHKRKL CFKEITLSLS KNSGLQRVFP 300 QDVEDAAILL MELSCGLFHT *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615250	2e-90	JX615250.1 Gossypium hirsutum clone NBRI_GE59146 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445661.1	0.0	PREDICTED: GATA transcription factor 21-like isoform X1
TrEMBL	A0A0D2TJF3	0.0	A0A0D2TJF3_GOSRA; Uncharacterized protein
STRING	Gorai.009G045000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16433	7	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	4e-27	cytokinin-responsive gata factor 1

Link Out ? help Back to Top
Phytozome	Gorai.009G045000.1
Entrez Gene	105769521

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]