PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G031400.2 | ||||||||
Common Name | B456_009G031400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 227aa MW: 25639.4 Da PI: 7.3763 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 32.7 | 1e-10 | 170 | 190 | 1 | 21 |
GATA 1 CsnCgttkTplWRrgpdgnkt 21 C+ C+ttkTplWR+gp+g+k Gorai.009G031400.2 170 CADCNTTKTPLWRSGPRGPKV 190 *******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.328 | 164 | 187 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.4E-4 | 164 | 211 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-5 | 164 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-7 | 168 | 190 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.3E-8 | 170 | 190 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTSSNCYSSL YPFPIDLNED DQHQHHQLFN LISQPSSSSS SSSSSSSPST SLTCPFSFSP 60 TVQHQQAAFY QSLPQQFHDD QQDQEKIHVP QDGPLRSDCE LRLSIWKKEE RVETHHQSHD 120 SAKWMPSKTR MMSSDHTDLS NSPTPKSEDH QEQKQPSSSP DNNNSTIRVC ADCNTTKTPL 180 WRSGPRGPKV LKFPVFFFFL IQTLALKSNV KSTKAIATQF LLKIFH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527020 | 0.0 | HQ527020.1 Gossypium herbaceum clone NBRI_C2_559 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447374.1 | 1e-137 | PREDICTED: GATA transcription factor 21-like | ||||
TrEMBL | A0A0D2Q849 | 1e-164 | A0A0D2Q849_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G031400.1 | 1e-136 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-14 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G031400.2 |
Publications ? help Back to Top | |||
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