PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G002500.6
Common NameB456_009G002500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 575aa    MW: 64779.8 Da    PI: 8.3133
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G002500.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.39.2e-07503542948
                         HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHH CS
            Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWF 48 
                         ++ +e L e+F++n  ps+  re L+k+lgL+ ++V + F
  Gorai.009G002500.6 503 PTAVEKLREVFAENELPSRVVRENLSKELGLEPEKVATEF 542
                         678999*****************************98755 PP
2PHD39.41.4e-13238293151
                         SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ C+   +  ++++vlCd +C+++fH+kCl+++l++e +p g   w+C+ C++k
  Gorai.009G002500.6 238 FCAKCKLreAFPDNDIVLCDgTCNRAFHQKCLDPPLDTEHIPPGdqGWFCKFCECK 293
                         699999854555********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.22E-14230296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.6E-12235294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.54236293IPR019787Zinc finger, PHD-finger
PfamPF006284.9E-11238293IPR019787Zinc finger, PHD-finger
SMARTSM002493.2E-9238291IPR001965Zinc finger, PHD-type
CDDcd155041.08E-32238290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.6E-8483540IPR009057Homeodomain-like
SuperFamilySSF466891.28E-5489542IPR009057Homeodomain-like
CDDcd000861.32E-4495538No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MRGTGKKLTD HGSAKSSSSK REAGSKLIAT LKKFKNRCKI SHGRVRKPKH HVKKVSSTLL  60
KRKVTASVTE GTGNDVSSAR KVGCKTNLHK ANKKGSSKKL GLSKLQGKNA ICASLEENGK  120
KDNADVRIKK LTSKTKKGQK DKVELDEASR LQRRTRYLLI KMKLEQNLID AYSGEGWKGQ  180
SREKIKPEKE LQRAKKQILK CKLGIREAIR QLDSLSSVGS IEGSVIAPDG SVYHEHIFCA  240
KCKLREAFPD NDIVLCDGTC NRAFHQKCLD PPLDTEHIPP GDQGWFCKFC ECKMEIIEAM  300
NAHIGTHFSV DSHWQDIFKD EAAFPDDANA SLNPGDEWPS DDSEDDDYDP ERRENSCRIS  360
GTATDGDESD ETDNSTSLSW SVDSEDLSGF GRHENHQFDS GGDSYETSDG EILSGRRRRR  420
AVDYRKLYDE MFGKDAPPYE QVSEDEDWGP GKRKHREKES DAASTLMTLY ESETKFLNIE  480
TTEMKRQLPS DLKSRRPFFR IPPTAVEKLR EVFAENELPS RVVRENLSKE LGLEPEKVAT  540
EFCKNIEISK TDGYKLIMHF GAHIYKYFLG NQSD*
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445963.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_012445964.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-157PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0D2TGR60.0A0A0D2TGR6_GOSRA; Uncharacterized protein
STRINGGorai.009G002500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-156pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]