PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G292400.1
Common NameB456_008G292400, LOC105765693
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 363aa    MW: 39153.4 Da    PI: 6.789
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G292400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-32196249255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Gorai.008G292400.1 196 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 249
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.76E-15193250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-29194250IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-24196249IPR006447Myb domain, plants
PfamPF002494.9E-7197248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEEKGGFDEQ CMNRIPDLSL HISPPNTAPP SISTATTNES HSSTFDIWSN KQYDALKPCS  60
SSQAAETELS LANPLGPVGS GLQPESFPRQ IHLLKCGQLS DINYGVSWLD DMPEPGLKPI  120
KGIPIYTDPR KSRPLYQVSP YSSYNCSSSS SASAPWVLHS ANGYRFNGIS MPQYEGSMGS  180
SRFIAKVHSK KNIRAPRMRW TSSLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV  240
KSHLQMYRTV KSTDKAAAAF SDGSGEEDED CLGVAKNSNS SVKQRSTETE YNVNGCPSSS  300
NLWAISSTGV QLSSSGTPVG STPEAPSSQS GNHFEGSNSF ADKKSTTGSN IDFHNPSLEF  360
SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17197251458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440351.10.0PREDICTED: probable transcription factor KAN2
TrEMBLA0A0D2UBU60.0A0A0D2UBU6_GOSRA; Uncharacterized protein
STRINGGorai.008G292400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17814510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.15e-47G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]