PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G280600.1 | ||||||||
Common Name | B456_008G280600, LOC105765573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23339 Da PI: 8.965 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 45 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ g+Wv+e+r+p +k+ r++lg+f ta++Aa+a++ a+ +l+g Gorai.008G280600.1 45 PVYRGVRRRN-PGKWVSEVREP---NKKSRIWLGTFPTADMAARAHDVAAIALRG 95 68*****887.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-12 | 45 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-31 | 46 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.247 | 46 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-31 | 46 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-21 | 46 | 105 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-8 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-28 | 47 | 105 | No hit | No description |
PRINTS | PR00367 | 1.3E-8 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVDSGSVSES GTDRPVNFSD DYVMLASSYP KRRAGRKKFR ETRHPVYRGV RRRNPGKWVS 60 EVREPNKKSR IWLGTFPTAD MAARAHDVAA IALRGKSACL NFADSAWNLP VPASSDRKDI 120 QKTVAEVAET FRTAEHSSGN SRNDAKRSEN TEMEKGFYLD EEALFGTQRF WANMAAGMMM 180 SPPRSGHDGG WEEHEVDDYV PLWSYSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 44 | 102 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ409060 | 0.0 | DQ409060.1 Gossypium hirsutum DREB1-like transcription factor (DREB1L) mRNA, complete cds. | |||
GenBank | KR233252 | 0.0 | KR233252.1 Gossypium barbadense C-repeat binding factor 3-like protein (CBF3L) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440211.1 | 1e-153 | PREDICTED: dehydration-responsive element-binding protein 1D isoform X1 | ||||
Refseq | XP_012440212.1 | 1e-153 | PREDICTED: dehydration-responsive element-binding protein 1D isoform X2 | ||||
Swissprot | Q9FJ93 | 2e-67 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0D2RNV4 | 1e-152 | A0A0D2RNV4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G280600.1 | 1e-153 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-59 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G280600.1 |
Entrez Gene | 105765573 |