PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G275600.3

Common Name

B456_008G275600, LOC105765523

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 677aa MW: 75385 Da PI: 7.8611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G275600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.7e-05	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Gorai.008G275600.3 63 KCDKCSREFCSPINYRRHIRVH 84 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0098	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.118	62	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	64	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MKSEDLNDSL DTFIRQAIGK EPFLPFSRTG DSPVQWIQLL HALDQQDIPG WPLLSPLKVQ 60 AQKCDKCSRE FCSPINYRRH IRVHHRLKKL DKDSAKNRDL LAAFWDKLSE DEAKEVVSFK 120 DVLLEGVPGS SVIKSLTTHV KRQGFSALPQ VCLRAGSALL DLVQARPSIF PISSQELFSI 180 LDDASERTFL CGAAVSMQKY IFDGEAGKIG LETKNLVACT SFLVEQKLVK EWLADKDAEA 240 LRCQKLLVEE EEAAQKRQVE LLERKRQKKL RQKEQKAKEQ RHWELEESKP NMDDLLEVNT 300 LAETSSPSAV DSDGQNPLMS TDQIIPSVEP NLFSKLEENV DYEIQTGFSN GYSDPGISQN 360 IERRTEQVGH RHIVVARRQT PPNSQRGVLN DFHASQNSHG FKCGGINKHG TNRERFAPIG 420 NGNKIWSQKP KAVNEGESLK IRMEKQAANQ LNQNKNHELL IGSISVTLEN YSNHDGNNLA 480 EACDRSLAEC RIPKNNVQEK SSKLDPVQGV TNRSTIKFWR PVSRHESKSS SPVQNGASES 540 EVQVIAEKDG ARTSSNETCL RSCSTDGIDG VVSMDLISTL KESVQPESSQ FDSHTAKAIL 600 AQRWKEALAG EHVTLVLTPN LDPPGCSEIE ADSSEKLVVK ARAFEASTAG PARGKFRRKP 660 EKGAKIKYIP KQRSAT*

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MKSEDLNDSL DTFIRQAIGK EPFLPFSRTG DSPVQWIQLL HALDQQDIPG WPLLSPLKVQ  60
AQKCDKCSRE FCSPINYRRH IRVHHRLKKL DKDSAKNRDL LAAFWDKLSE DEAKEVVSFK  120
DVLLEGVPGS SVIKSLTTHV KRQGFSALPQ VCLRAGSALL DLVQARPSIF PISSQELFSI  180
LDDASERTFL CGAAVSMQKY IFDGEAGKIG LETKNLVACT SFLVEQKLVK EWLADKDAEA  240
LRCQKLLVEE EEAAQKRQVE LLERKRQKKL RQKEQKAKEQ RHWELEESKP NMDDLLEVNT  300
LAETSSPSAV DSDGQNPLMS TDQIIPSVEP NLFSKLEENV DYEIQTGFSN GYSDPGISQN  360
IERRTEQVGH RHIVVARRQT PPNSQRGVLN DFHASQNSHG FKCGGINKHG TNRERFAPIG  420
NGNKIWSQKP KAVNEGESLK IRMEKQAANQ LNQNKNHELL IGSISVTLEN YSNHDGNNLA  480
EACDRSLAEC RIPKNNVQEK SSKLDPVQGV TNRSTIKFWR PVSRHESKSS SPVQNGASES  540
EVQVIAEKDG ARTSSNETCL RSCSTDGIDG VVSMDLISTL KESVQPESSQ FDSHTAKAIL  600
AQRWKEALAG EHVTLVLTPN LDPPGCSEIE ADSSEKLVVK ARAFEASTAG PARGKFRRKP  660
EKGAKIKYIP KQRSAT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	269	ERKRQKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440133.1	0.0	PREDICTED: uncharacterized protein LOC105765523 isoform X1
TrEMBL	A0A0D2T826	0.0	A0A0D2T826_GOSRA; Uncharacterized protein
STRING	Gorai.008G275600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-153	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.008G275600.3
Entrez Gene	105765523

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]