PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G273700.1
Common NameB456_008G273700, LOC105765503
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 397aa    MW: 42538.4 Da    PI: 5.7167
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G273700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30188247260
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ d ++++itY+geH+h+k
  Gorai.008G273700.1 188 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLDSDIFIITYTGEHTHPK 247
                         699************************998****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-30173248IPR003657WRKY domain
PROSITE profilePS5081132.237182248IPR003657WRKY domain
SuperFamilySSF1182905.1E-26183248IPR003657WRKY domain
SMARTSM007749.7E-37187247IPR003657WRKY domain
PfamPF031061.3E-25189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAEDWDLYAV VRSCTSVANT TRAVENNNNE NCSSSFEDPL ACLASLTFEE DDDPFPFPNL  60
SQLAETGHLQ DSYKPFLPNA DPIAAAAAID PCSSSSHHGG SSSQLHQHQR LQHQQEQPAA  120
TGIGSPLTPT SAPLFTFAGF GNQKQVQPQS HQQQQTRAQP PVQTPRSRKR KNQQKRTVCH  180
VTADKLSSDP WAWRKYGQKP IKGSPYPRNY YRCSSSKGCS ARKQVERSNL DSDIFIITYT  240
GEHTHPKPTH RNSLAGSTRN KLSTVQKPTT TKDSAAETIP TTSTVSCSSP RSATSLSPIS  300
PTTTLSAPED TAAAVHKTGD NGGEEESVYM DVESDEDDDD LLIPNVHVDE DLFKGLEELV  360
GSGSNGVGIV PTFGDNFSSW STGNSAAAGA AASGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191892491880Disease resistance protein RRS1
5w3x_D5e-191892491880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384780.0KM438478.1 Gossypium aridum WRKY113 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440092.10.0PREDICTED: probable WRKY transcription factor 27
SwissprotQ9FLX85e-60WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A0D2RND30.0A0A0D2RND3_GOSRA; Uncharacterized protein
STRINGGorai.008G273700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-58WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]