PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G270600.1
Common NameB456_008G270600, LOC105762549
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 287aa    MW: 32005.5 Da    PI: 5.1801
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G270600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.3e-29107168159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs++dp+++++ Y+g+H+++
  Gorai.008G270600.1 107 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDDDPTIFDVAYRGRHTCS 168
                         59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-28101169IPR003657WRKY domain
PROSITE profilePS5081123.032102165IPR003657WRKY domain
SuperFamilySSF1182901.83E-25105168IPR003657WRKY domain
SMARTSM007741.7E-40107169IPR003657WRKY domain
PfamPF031068.6E-27108167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEDKEEREQK CLINELLQGR ELAMQLQAHL NLPSCNETRE LLLQKIQASY DKALSLLNYK  60
AIGTSDTIDP QPQSLPVRDD AAVQRKSLAR WTHQVRVRPG TATEGNLDDG FSWRKYGQKD  120
ILGAKYPRGY YRCTHRNVQG CLATKQVQRS DDDPTIFDVA YRGRHTCSNN NQEQGTSTIE  180
PYQQQQHIGN QTYPLLPNYL SLNRKVENDV GDGNLETGNL SPTSSCPNPM GVMNNGSTSV  240
AIESEFTEII RAATSAMNAP TVGLDFPFGN AELDPNFTFD DHGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-21106167768OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697820.0KF669782.1 Gossypium hirsutum WRKY transcription factor 59 (WRKY59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435761.10.0PREDICTED: probable WRKY transcription factor 30 isoform X2
TrEMBLA0A0D2UAI10.0A0A0D2UAI1_GOSRA; Uncharacterized protein
STRINGGorai.008G270600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.14e-50WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]