PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G253300.2
Common NameB456_008G253300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 272aa    MW: 30618.9 Da    PI: 5.0795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G253300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-2947106258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H++
  Gorai.008G253300.2  47 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhtqDCWATKQVQRSDEDPTIFEITYRGTHTC 106
                         8**************************998899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-2840106IPR003657WRKY domain
PROSITE profilePS5081121.63141104IPR003657WRKY domain
SuperFamilySSF1182902.09E-2545106IPR003657WRKY domain
SMARTSM007743.2E-3946108IPR003657WRKY domain
PfamPF031068.5E-2747106IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLLQIHEVDQ MLMIPSFSGS GFCRKMLPRW TDHVRVTSEN LLEGTHDDGY SWRKYGQKDI  60
LGAKYPRSYY RCTYRHTQDC WATKQVQRSD EDPTIFEITY RGTHTCVHGN QPVPPPASPE  120
KQEYKLTNLN TNNNQQLQSQ DILSNLRKGL TVNTEMATSF SFPSTSFGWL KTENHSFSPS  180
GVLDNNNILN SFSSPFTSPA TPELNYFSAS QPQMNSVGGM LSTQNSEPDL KELISANTSA  240
TNSPIIDLDF SLDQLELDPN FQFDAQGFFS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-2047106968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697780.0KF669778.1 Gossypium hirsutum WRKY transcription factor 60 (WRKY60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439758.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A0D2U9E00.0A0A0D2U9E0_GOSRA; Uncharacterized protein
STRINGGorai.008G253300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-52WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]