PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G248900.2
Common NameB456_008G248900, LOC105765248
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 673aa    MW: 74962.9 Da    PI: 6.6198
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G248900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.6e-094264631954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Gorai.008G248900.2 426 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 463
                         554459******************************88 PP
2BELL113.89.4e-37288358272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         ++elq++k+k+ls+leeVd+rYk y++q+++v+ssFeavag g+a +Y +lA+ka+SrhFrcL+d i++qi
  Gorai.008G248900.2 288 FTELQRRKTKMLSMLEEVDRRYKIYCDQMKAVVSSFEAVAGTGAASVYSALASKAMSRHFRCLRDGIVSQI 358
                         679*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-57223356IPR006563POX domain
PfamPF075261.2E-46229354IPR006563POX domain
PROSITE profilePS5007112.179404467IPR001356Homeobox domain
CDDcd000861.97E-11407468No hitNo description
SMARTSM003895.8E-9407471IPR001356Homeobox domain
SuperFamilySSF466895.56E-17408474IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27410473IPR009057Homeodomain-like
PfamPF059209.1E-18424463IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MARESCEDKS RNIVSSTGFC YSEVSSGNST MQTHLVNQIQ GFESNPEIFN LTTGMEMIGF  60
AKNLQQQQGD TNNMIMWKGF FNKHGNNPGA AGPSSPSSSK PINESTTDFY QHEFHKPEFT  120
TGISETSTGN LIVGSESAPW QENRLLVDDS SFRCVFPCEG NERPSQGLSL SLSSSNPTSI  180
GLQSFELRQT SHSNHDDQPD DMRFIGSSSR DGFFGKPAIV QQHEGQFQIR GSRYLNAAQE  240
LLNEFCSLGT KQLDTSKQKQ TQKTTKQWDD DDGGASSSRK QSLYSLDFTE LQRRKTKMLS  300
MLEEVDRRYK IYCDQMKAVV SSFEAVAGTG AASVYSALAS KAMSRHFRCL RDGIVSQIQA  360
TRKAMGEKDT VAPGTTKGET PRLRILDQAL RQQRAFQQMS MMESHPWRPQ RGLPERSVSV  420
LRAWLFEHFL HPYPSDVDKH ILARQTGLSR SQVSNWFINA RVRLWKPMVE EMYLEETKEH  480
ENNMVSSDNG GTDGGDDNNN NDRLNIPLAD QKPTPDQLVR VDSECLSSII TTNPEKNDGK  540
SGTKTLENQH LHHHHHHHHH HQQQSFGTYG ATAMELDFAS YGDHTAGGGV PYHNANQSFN  600
GGGGVSLTLG LQQHGGSGVS LAFSPATQTS LFYRRDHIED CQPVQYSLLD NEGQHLPYRN  660
LMGAQLLHDL AG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15413470158Homeobox protein Meis1
4xrs_B1e-15413470158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144970.0JX614497.1 Gossypium hirsutum clone NBRI_GE57913 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439704.10.0PREDICTED: homeobox protein BEL1 homolog
RefseqXP_012439705.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388971e-147BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0D2Q1D80.0A0A0D2Q1D8_GOSRA; Uncharacterized protein
STRINGGorai.008G248900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-142TALE family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]